HsaINT0106820 @ hg19
Intron Retention
Gene
ENSG00000117983 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7516]
Coordinates
chr11:1260668-1261173:+
Coord C1 exon
chr11:1260668-1260796
Coord A exon
chr11:1260797-1261028
Coord C2 exon
chr11:1261029-1261173
Length
232 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GCTCACCCTGCCGGCCCTAGGCT
3' ss Score
6.85
Exon sequences
Seq C1 exon
CCTTGTTCTGTGACTTCTACAACCCACATGGGGGCTGTGAGTGGCACTACCAGCCCTGCGGGGCACCCTGCCTAAAAACCTGCCGGAACCCCAGTGGGCACTGCCTGGTGGACCTGCCTGGCCTGGAAG
Seq A exon
GTGAGGGGCAGCCTTTCTTGGATGGAGCCTCCTCTCCTTGGGTTCCCGAGTGTACGTGGGGGGGCGGGGATCCCCAGGGACGCGGTGTAGGCTCCCGTAAACTGCACAATGCAAGCCTTGAGGGCAGGCCCCTGCTGGCTGGTGGGGGGCGGCTACTCCCTGCAGCATGGAGCCCCTGGCTGGAGAGACTAAAGGGCCCTGGTGAGTCTTCTGCTCACCCTGCCGGCCCTAG
Seq C2 exon
GCTGCTACCCGAAGTGCCCACCCAGCCAGCCCTTCTTCAATGAGGACCAGATGAAGTGCGTGGCCCAGTGTGGCTGCTACGACAAGGACGGAAACTACTATGACGTCGGTGCAAGGGTCCCCACAGCGGAGAACTGCCAGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117983-MUC5B:NM_002458:27
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCTGTGACTTCTACAACCCAC
R:
CTCTGGCAGTTCTCCGCTGT
Band lengths:
268-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)