BtaINT0096552 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008274 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr29:51394322-51394785:-
Coord C1 exon
chr29:51394657-51394785
Coord A exon
chr29:51394470-51394656
Coord C2 exon
chr29:51394322-51394469
Length
187 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CCGCCCTGCGTCCACCCCAGGCT
3' ss Score
7.46
Exon sequences
Seq C1 exon
CTCTGTTCTGCGACTACTACAACCCACACGGGCAGTGCGAGTGGCACTACCAGCCCTGCGGCGCGCCCTGTCTGAAGACCTGCCGGAACCCCAGTGGGCTTTGCCTGATGGACCTGCCAGGCCTGGAAG
Seq A exon
GTGAGGACAGGCTTCTATGGGGAGGCCACACCTCGTCACCCCAGGACAGCACACAGGCGAGGGGGCCAGGGGCTCCTGCCGCCCCATGTCCGCCCCTGGGACAGGGAGGCAGAGACGGCGGTGCAGCAACCGCACACGACGCCTGGCTCGAGACGTGAGTCTTCTCCCCGCCCTGCGTCCACCCCAG
Seq C2 exon
GCTGCTACCCGAAGTGCCCGTCCAGCAAGCCATTCTTCAACGAGGACCAGATGGAGTGTGTGGCCCAGTGCAGTGGCTGCTACGACGGAGATGGGAACTACTACGATGCTGGCACGAGGGTTCCCAGCACGGAGAACTGTCAGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008274:ENSBTAT00000010897:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACTACTACAACCCACACGG
R:
CAGTTCTCCGTGCTGGGAAC
Band lengths:
258-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]