HsaINT1023952 @ hg38
Intron Retention
Gene
ENSG00000215182 | MUC5AC
Description
mucin 5AC, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7515]
Coordinates
chr11:1180022-1180516:+
Coord C1 exon
chr11:1180022-1180150
Coord A exon
chr11:1180151-1180353
Coord C2 exon
chr11:1180354-1180516
Length
203 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
CTGGCCTCTTTGGCCCACAGGCT
3' ss Score
9.26
Exon sequences
Seq C1 exon
CTCTGTTCTGCGACTACTACAACCCCGAAGGCCAGTGCGAGTGGCACTACCAGCCCTGCGGGGTGCCCTGCCTGCGCACCTGCCGGAACCCCCGTGGAGACTGCCTGCGGGACGTCCGGGGCCTGGAAG
Seq A exon
GTGGGCTGGGGCCGGTCGGAGGGTGGCCTGGGCTCCGCCGCCTGTGGCCTTCTCCTGGCCCCTCGAGGAGCCTCTGTGGCCCCAGCTTCCAGCACATTCTGGTGCTGTCGGCGAGGCCCGCTGCTTGGGGGCTGGGCGGAGCCCTCCAGAGCGAGGTGGACGACACTCGGTCTGGTTGTGACTCTGGCCTCTTTGGCCCACAG
Seq C2 exon
GCTGCTACCCCAAGTGCCCACCAGAGGCTCCCATCTTTGATGAGGACAAGATGCAGTGTGTGGCCACCTGCCCAACCCCGCCTCTGCCACCACGGTGCCACGTCCATGGGAAGTCCTACCGGCCAGGTGCAGTGGTGCCCTCGGACAAGAACTGCCAGTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215182:ENST00000621226:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGTTCTGCGACTACTACAACC
R:
CAGGACTGGCAGTTCTTGTCC
Band lengths:
292-495
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains