HsaINT0106854 @ hg19
Intron Retention
Gene
ENSG00000184956 | MUC6
Description
mucin 6, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7517]
Coordinates
chr11:1027965-1028387:-
Coord C1 exon
chr11:1028226-1028387
Coord A exon
chr11:1028060-1028225
Coord C2 exon
chr11:1027965-1028059
Length
166 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
CCCGGGCCTGTCATCCCCAGAGG
3' ss Score
8.42
Exon sequences
Seq C1 exon
GGCTCTGCGGCAACTTCAACGGGGACACAACGGATGACTTCACCACTAGCATGGGTATCGCCGAGGGCACCGCCTCGCTGTTTGTGGACTCCTGGCGGGCGGGGAACTGTCCGGCCGCTCTGGAGCGTGAGACTGACCCCTGCTCCATGAGCCAGCTCAACA
Seq A exon
GTGAGTGTCCGGCCCCCCACTCCCCTGGCTGCCCCCCCAGCGCCCACAGTTCTGACAGACCCCTGGACTGGACCACAGGCCCAGCTGCCAGGGTGGGGGGTCCCTGGGAGGAGCCGTAGCTGGAATGGGAGGGGCCGGGACTCACGCCCGGGCCTGTCATCCCCAG
Seq C2 exon
AGGTGTGTGCAGAGACCCACTGCTCCATGCTGCTGAGGACAGGCACGGTGTTCGAGAGGTGCCACGCCACAGTGAACCCTGCACCCTTCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184956-MUC6:NM_005961:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(12.3=34.5),PF087426=C8=PU(0.1=0.0)
A:
NA
C2:
PF087426=C8=PU(40.3=96.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTCAACGGGGACACAACG
R:
TGTAGAAGGGTGCAGGGTTCA
Band lengths:
244-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)