RnoINT0095763 @ rn6
Intron Retention
Gene
ENSRNOG00000056817 | Muc6
Description
mucin 6, oligomeric mucus/gel-forming [Source:RGD Symbol;Acc:628826]
Coordinates
chr1:214623865-214624206:-
Coord C1 exon
chr1:214624045-214624206
Coord A exon
chr1:214623960-214624044
Coord C2 exon
chr1:214623865-214623959
Length
85 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
ACTATATCTGTTGCCTCCAGAGG
3' ss Score
7.18
Exon sequences
Seq C1 exon
GGCTCTGCGGAAATTTCAACGGAGACACGACAGATGACTTCACAACCAGCATGGGTATTGACGAAGGCACTGCCTCACTCTTTGTGGATTCCTGGCGTGCGGGGAACTGTCCAGCTGCCCTAGAGCGTGAGACGGACCCCTGCTCCATGAGCCAGCTCAACA
Seq A exon
GTGAGTTTCCTGCACCCCCACCTTCAGCCATCTAAGCCCGTTGGGATGGGAACGGGATACCCACGACTATATCTGTTGCCTCCAG
Seq C2 exon
AGGTGTGTGCAGAGACCCACTGTTCCATGCTGCTGAAGAAAGGCAGTGTGTTTGAGAAGTGCCACAATGTGGTGAACCCCCAGCCCTTCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056817:ENSRNOT00000087497:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(12.3=34.5),PF087426=C8=PU(0.1=0.0)
A:
NA
C2:
PF087426=C8=PU(40.3=96.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGAGACACGACAGATGACT
R:
GAACAGTGGGTCTCTGCACAC
Band lengths:
169-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]