HsaINT0106856 @ hg19
Intron Retention
Gene
ENSG00000184956 | MUC6
Description
mucin 6, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7517]
Coordinates
chr11:1027268-1027817:-
Coord C1 exon
chr11:1027685-1027817
Coord A exon
chr11:1027518-1027684
Coord C2 exon
chr11:1027268-1027517
Length
167 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
3' ss Seq
GATGCCCGGGTCCCCCACAGCCA
3' ss Score
6.01
Exon sequences
Seq C1 exon
AGGTGCGTGTACCAGGCCTGCAACTACGAGGAGACCTTTCCCCACATCTGTGCCGCCCTGGGCGACTACGTACACGCCTGCTCCTTGCGGGGCGTCCTGCTCTGGGGCTGGAGAAGCAGTGTGGACAACTGCA
Seq A exon
GTGAGTGCCCGACGGGGCTTAAGCGGGGTCACGGCAGGCTGGGCTCACGAGGGGGTGTCCTGGGACCCCAAGCTCTGAGGCTCTGCAGTGCCCGGCAGGCAGGGGAACCCGAGATTGCCCTCCCGGCCGCCCCCTCCCGGAGAGTCTGATGCCCGGGTCCCCCACAG
Seq C2 exon
CCATCCCCTGCACGGGTAACACCACCTTCAGCTACAACAGCCAAGCCTGTGAGCGCACCTGCCTGTCGCTGTCGGACCGTGCCACCGAGTGCCACCACAGCGCCGTGCCCGTGGACGGTTGCAACTGCCCCGATGGCACCTACCTGAACCAAAAGGGCGAGTGTGTGCGCAAGGCCCAGTGCCCGTGCATACTGGAGGGTTACAAGTTCATCCTGGCCGAGCAGTCCACTGTCATCAACGGCATCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184956-MUC6:NM_005961:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(57.1=100)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=69.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTTTCCCCACATCTGTGC
R:
TTGGTTCAGGTAGGTGCCATC
Band lengths:
253-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)