RnoINT0095765 @ rn6
Intron Retention
Gene
ENSRNOG00000056817 | Muc6
Description
mucin 6, oligomeric mucus/gel-forming [Source:RGD Symbol;Acc:628826]
Coordinates
chr1:214623164-214623779:-
Coord C1 exon
chr1:214623647-214623779
Coord A exon
chr1:214623414-214623646
Coord C2 exon
chr1:214623164-214623413
Length
233 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
3' ss Seq
TGACCCCTCCATTCCCACAGCTG
3' ss Score
9.76
Exon sequences
Seq C1 exon
AGATGTGTGTACCAGGCCTGCAACTATGAGGAGACCTTCCCTCACATCTGTTCTGCGCTGGGGGCCTATGCCCATGCCTGCTCCTCCCGTGGCGTCCTGCTCTGGGGCTGGAGGAACAGTGTGGACAACTGCA
Seq A exon
GTGAGTGCTGACTGTGACGAGAGAGTGGAGGGAGGGGTCAGAAGAGGCAGGGTCGCAGGCATAGCAGTGATGTGAGCCTAGACCACAACAGGGCCTCATGGTCAGCCTGAGGGGTTCTAGGGCCTTAATCTCCGCTCAGCCATTCCTCTGCCTGCATCACCACATCCCCAAGCCCCAGACCCTCTCCTCACACCGCTTCCTGTCCCGAGAACCTGACCCCTCCATTCCCACAG
Seq C2 exon
CTGTGCCGTGCTCTGGCAACCGTACATTCAGCTATGATAGCAAGGCCTGTGACCGTACCTGCCTGTCTCTGTCGGACCGTGAGACAGAGTGTCACGCGAGTCCTGTGCCGGTGGATGGCTGCAACTGTCCTGAGGGCACCTACCTGAACCACAAGGCAGAATGTGTGCACAAAACCCAGTGTCCCTGTCTGCTGGACAGCCACAAGTTTGTCCAGGCTGATCAGTCAACCATGATCAACGGGGTCATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056817:ENSRNOT00000087497:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(57.1=100)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=69.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTACCAGGCCTGCAACTA
R:
TGTGCACACATTCTGCCTTGT
Band lengths:
299-532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]