HsaINT0106860 @ hg19
Intron Retention
Gene
ENSG00000184956 | MUC6
Description
mucin 6, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7517]
Coordinates
chr11:1031813-1033075:-
Coord C1 exon
chr11:1033013-1033075
Coord A exon
chr11:1032054-1033012
Coord C2 exon
chr11:1031813-1032053
Length
959 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GAGCACTGCTCTCTCTGTAGCCC
3' ss Score
6.81
Exon sequences
Seq C1 exon
GTCTGGCTAACACCTCCTACACCAGCCCAGGCCTCCAGAGGCTGAAGGACTCTCCACAGACAG
Seq A exon
GTAAGAACACAGCGGCCACTGATCCTGCCGCCCAGACCACCCAGGCCCGGTGTGCAGGAGAGAGGGGCCCGGAGCCCAGGTCACCCCCAAGACACACACATCCAACACACATATATGCACCAACATGAACACACATGCACATACACCCAACACACACACATACCCAATATACACATGCACACACACCTGACACACGCATACACATGTACATGACACATGCATGAGCACACGTCACACACACACCCAACACTCTACACAGACACACAACCCAACACACATGCACACACACCCAACACACACAACCTACACACAAACACACCTGACAAACACATGCACACACACCCAACACCCATGCACACACATCCCAGACATGCAAACATGCACACTTACAACACGCACGACTTACACATGTGCACGCACCCAACACACACACACCCTACACACACATGCACCCTATGTACACACCCTACACACCTGAGACACGCACCCAACACACACATACACACCCCGAATGCACACACATGCACTCGACACACATGCCCAGCTCACACAAACACACATGTGCATGCAACACAATCACACACACCCAACACACATGCAGGTGTATATCTCACACGCCTACACAGCCCTCCAACACACACACACCCACAATGCACACATGGACACACCTGACACGTATGCACACACCCGAGACACGCACATACGTGCACACACGTGCACACACACAACACACATACGTGTACCCACACACACGTGTGTGCACATGCCCACAGCGGTGCTGACTCCTGGCCAGGCATATACCATAGCACTCAGGTTCATCGGATGTCTGGGGTTTCCACAGCCTGGCCCCAACTCAAAAACCCTGGCCCAGGGAGACGAGTGACCTCTCTGCCTGCCCCAGCCCTGCCTGGCCAGGATGGTGGGGACACAGGGCTGTGTGAGCACTGCTCTCTCTGTAG
Seq C2 exon
CCCCGGACAAAGGCCAGTGCTCCACGTGGGGGGCTGGTCACTTCTCCACCTTCGACCACCACGTGTACGACTTCTCGGGGACGTGCAACTACATCTTCGCGGCCACCTGCAAGGACGCCTTCCCCACCTTCAGTGTCCAGCTGCGGCGAGGCCCAGACGGGAGCATCTCGCGGATCATCGTGGAGCTGGGGGCCTCCGTCGTCACTGTGAGCGAAGCCATCATCTCAGTCAAGGACATCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184956-MUC6:NM_005961:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.318 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009420=VWD=PU(49.7=91.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGCTAACACCTCCTACACC
R:
CCGATGTCCTTGACTGAGATGA
Band lengths:
303-1262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)