MmuINT0102506 @ mm9
Intron Retention
Gene
ENSMUSG00000048191 | Muc6
Description
mucin 6, gastric [Source:MGI Symbol;Acc:MGI:2663233]
Coordinates
chr7:148837754-148838208:-
Coord C1 exon
chr7:148838155-148838208
Coord A exon
chr7:148837998-148838154
Coord C2 exon
chr7:148837754-148837997
Length
157 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGG
5' ss Score
4.84
3' ss Seq
TATCTTTTTTTTTTTTTCAGCCC
3' ss Score
10.25
Exon sequences
Seq C1 exon
GTGCCTGGACTGGAGATGTCACAGACTCCGACACTGAGGATAACCTGCAATCCT
Seq A exon
GTAAGGCCTAGAGGGACAGCAGTGCCCAGGCCAGAGCTGGGTGGGCGTGTGGGATTGGGGCTATCTAGGGCCACAGCTTCTAGACCAGGCTGCCCCAGTCATGCCCTACCTGGACATAGGAAATGGGACTGAGTGTGTATCTTTTTTTTTTTTTCAG
Seq C2 exon
CCCCAGAAAAGGGTTGGTGCTCCACATGGGGAGCTGGCCACTTTTCCACCTTTGACGGCCATGAGTATAATTTCCAAGGGATGTGCAATTATATCTTTACGGCCACCTGTGGGGATGACGTGCCCGCCACCTTTAGCATCCAGCTGCGGAGAGATATGGAGGGGAATATCTCCCGGATCATCATGGAACTGGGGGCTTCTGTGGTTACTGTGAACAAGGAAACCATCTCTGTCAGGGACATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048191-Muc6:NM_181729:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.474 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009420=VWD=PU(63.6=91.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGACTCCGACACTGAGGA
R:
CACAGTAACCACAGAAGCCCC
Band lengths:
247-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: