GgaINT1018450 @ galGal4
Intron Retention
Gene
ENSGALG00000020492 | MUC6
Description
mucin 6, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7517]
Coordinates
chr5:14423044-14424294:+
Coord C1 exon
chr5:14423044-14423071
Coord A exon
chr5:14423072-14424053
Coord C2 exon
chr5:14424054-14424294
Length
982 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
TCCATTTTTCTCATTTATAGTTT
3' ss Score
8.95
Exon sequences
Seq C1 exon
ATGGAAGAGGAGTACTTTGTGTCAACAG
Seq A exon
GTAACAGCTCATTGGAAAACAGTTTTTTTCTACATGACCTGAATAAAAACAATAGTATTCTCCAAACATTACATCACTCTTAAAGAGTAAAAGTATGTTTCAGCTTTAAAATAATGAATATAAATCACAGGTAGACATTTGCTAACCTTACCTGATAGTTTCTGCTCCTAAGATACAGTCTAAATACTGAGCTTCATAAAGCTACATCAACAAAATTGTTGAACAACGACAGGCAACGAAGTAAGTCTGGAAATAGATTAAAAAATGACGATTTTACTTACTTCAGTAGTTTTATCAACTTCAGAGGGACTGTTCAAATGCTCTAAGTAGGTATAGAAATGTCTACAACATCAAACGCTGGAGTTATATCTCTCTTTTTATGATTCATTTCAACCTCCTAATGTCTGTCCGTTCAGTCAAAAAGTGATTGTTAAAAATGATAAGTGATTAAAACATTCCCTATATTTACAATGTTGGCTTGAACTTTGTCACACAAACATGGAACTAAAAAAGTCGGGACTTAAAAGTGGAAGACTGTCTTTGGATATCTAATGATCTGACTGTGCAGTGAATTCATGGTACTTAGATAGGCATAGATAGCCCCCTAAATGTTGTATCTGGGATGCTAAGATATCTCTTCAGTAGCAAGTTGTTACCTTTACAAACAGACTGAGTAGACTGGAACAAGGCAGTTAACATTAAAATCACTCGAGGAGATGCAAGGGTGTTTCTCAAAGCTAAAAGGAAGAAAAGGAGCTCTCCTACTTACAGTAAATAAAAGAGTATTGCTCTTACTCCAACTGTTGTTTGATTTCCTGAGTAGAAGCAAAATTTTAAGGCTACGAAAACTTCTCTAGAATGCTGTTCACATGATTAATTAATTAGAAACTTATCCGATTTTCCTGTTATCTATGTTTGAAATGACAATGAGAATGAACAAATGCACTGCAAGTAGGCCTAAGTCCATTTTTCTCATTTATAG
Seq C2 exon
TTTTGAGCAAGGATTCCTGTTCTACCTGGGGCGGAGGGCATTTTTCAACTTTCGATAAATATCAGTATGACTTCACTGGGACTTGCAACTATATCTTTGCAACTGTATGTGATGAATCCAGCCCAGACTTCAACATTCAGTTCCGCCGTGGGCTGGACAAAAAAATTGCAAGGATCATTATTGAACTGGGTCCTTCTGTCATCATTGTTGAGAAAGACAGCATTTCTGTCAGGAGTGTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020492:ENSGALT00000032694:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009420=VWD=PU(38.7=91.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGAGGAGTACTTTGTGTCA
R:
CGACACTCCTGACAGAAATGCT
Band lengths:
267-1249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]