HsaINT0106862 @ hg38
Intron Retention
Gene
ENSG00000184956 | MUC6
Description
mucin 6, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7517]
Coordinates
chr11:1025805-1026141:-
Coord C1 exon
chr11:1026000-1026141
Coord A exon
chr11:1025916-1025999
Coord C2 exon
chr11:1025805-1025915
Length
84 bp
Sequences
Splice sites
5' ss Seq
ACGGTAACC
5' ss Score
6.62
3' ss Seq
TCAGCGCCCTCTCCCTGCAGGAC
3' ss Score
12.27
Exon sequences
Seq C1 exon
CTCCTGCTCAAGGGGGAGGTGGGCCTGTCAGCAGGGCACCCACTGCCCATCCACCTGCACCCTCTACGGGGAGGGCCACGTCATCACCTTCGACGGCCAGCGCTTCGTATTCGACGGCAACTGCGAGTACATCCTGGCCACG
Seq A exon
GTAACCATCGGGTGCCAGGCCGCAGGGGCCGGGGACCCAGAGGCACGGCCTCCAGGGCTCCTCCTCAGCGCCCTCTCCCTGCAG
Seq C2 exon
GACGTCTGTGGTGTCAACGACTCACAGCCCACCTTCAAGATCCTGACAGAGAACGTCATCTGTGGGAACTCCGGGGTCACATGCTCACGGGCCATCAAGATCTTCCTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184956:ENST00000421673:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(66.1=85.4),PF0009420=VWD=PU(18.4=58.3)
A:
NA
C2:
PF0009420=VWD=FE(23.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGTCATCACCTTCGACGG
R:
GGAAGATCTTGATGGCCCGTG
Band lengths:
172-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development