HsaINT0106865 @ hg19
Intron Retention
Gene
ENSG00000184956 | MUC6
Description
mucin 6, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7517]
Coordinates
chr11:1023947-1025083:-
Coord C1 exon
chr11:1024844-1025083
Coord A exon
chr11:1024104-1024843
Coord C2 exon
chr11:1023947-1024103
Length
740 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
ACTGGCACACACCCCTGCAGGTA
3' ss Score
7.09
Exon sequences
Seq C1 exon
GATCCCCTCTGCGGCTTGTGTGGCAACTTCAACGGGAACATGAAGGACGACTTCGAGACGCGCAGCAGGTACGTGGCATCCAGCGAGCTGGAGTTGGTGAACTCGTGGAAGGAGAGCCCGCTGTGCGGGGACGTGAGCTTCGTGACAGACCCCTGCAGTCTCAATGCCTTCCGGCGCTCCTGGGCCGAGCGCAAGTGCAGCGTCATCAACAGCCAGACCTTTGCCACCTGCCACAGCAAG
Seq A exon
GTGGGCACCGGGCACGAGGGCTGTGCGCCTGCCCCTCCACAAATGTCCGGTGGGGGCGGGGGAAGGGGCGGGGAAGCCAGGCACGGTTCTCCCTCCGTGGGATCCCAGACCAGCCAGGTCAGGGTGCAGAGAGTTTCAGACCCTCTGCCTGAGTGCAGGGCCCTGATGTGGGGCCGACTCGTGCACTGTGGCTGTTAAGCAGCCCCCCGGCCTCCACCCACCAGATGCCAATAGCACCCCCAGACAGTGCCACGAGTCCCCTGGGGCAGCATCGCCTGGTGGGCCCCCTGCTCAGGAGCTGGTGGTCAGGGAGACCTCCAGGATGCAGGGCGTGCACTTCCCAGCCCAGGGCGTGATCCGGCCATCGCGGCGCAGTAAGAACTGAGAGGATGGGGGCACCCCGCGGGGGAACAGCATGGCACTGGCCCGCTGAATGTGAGCGTGACGTGGGGGGAGCAGAGACCCTGGGTGGGACTGCAGTGGCCGTGGTTAGCGGCAGCGGCATCTTGGTCCCGATGGCGGGTCTCAAGGCGTGAGCTCGGGTCAGGCCTCCGTGGCAGCATCGGCTCCGGGAGCGTGGCTAGCGGTCAGGGCTGAGGTCCACGTGGTGCCGCTCACCCAGTCCCAGCGCCCTTACCGCCACACTCCGGCCTGACCACACTGAGGGCCCTGCAGGTGGCAAAGCCTGATGCCCCGCCATCCCCCGGCAGCCAGACACTGACTGGCACACACCCCTGCAG
Seq C2 exon
GTATACCACCTGCCCTACTACGAGGCCTGCGTGCGCGACGCATGTGGGTGTGACAGTGGCGGGGACTGTGAGTGTCTGTGCGATGCCGTGGCTGCCTACGCCCAAGCCTGTCTGGACAAGGGTGTGTGCGTGGACTGGAGGACCCCGGCCTTCTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184956-MUC6:NM_005961:24
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(15.1=28.8),PF087426=C8=PU(28.0=26.2)
A:
NA
C2:
PF087426=C8=FE(69.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGTGTGGCAACTTCAACG
R:
CACACACCCTTGTCCAGACAG
Band lengths:
355-1095
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)