RnoINT0095774 @ rn6
Intron Retention
Gene
ENSRNOG00000056817 | Muc6
Description
mucin 6, oligomeric mucus/gel-forming [Source:RGD Symbol;Acc:628826]
Coordinates
chr1:214619503-214620617:-
Coord C1 exon
chr1:214620378-214620617
Coord A exon
chr1:214619660-214620377
Coord C2 exon
chr1:214619503-214619659
Length
718 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
TGGTACCCTCCTCTCCACAGGTA
3' ss Score
11.64
Exon sequences
Seq C1 exon
GACCCCCTCTGTGGCTTGTGTGGCAACTCCAATGGGAACATGAAAGATGACTTCGAAACACGCAGCAAGTATGTGGCGTCCAATGAGCTGGAGTTTGTGAACTCGTGGAAGGAAAGCCCACTGTGTGGGGATGCAAGTTACGCGGTGGATCCCTGCAGCCTGAATACCTTCCGGCGCTCGTGGGCTGAGCGCAAATGCAACATTATCAACAGCCAGACCTTTGCCGCTTGCCACAGCAAG
Seq A exon
GTGGGTCCTGTCCTCCAAGACAGGGACAGCGGGCACAGTCCTCCTACCATTGGGCTCCAGGTTAGCTGGAGGTTATCAGGTGTGAAGAGGGGTGTACCCAGCGCCGGAGGCCAGGGTCACACACAAGCTAGATATGATAAGCAGTGCCCAGACCTCTGCCCACCAGAGGACCATAGCAGATAAGACAATGAGTAGAAGTGTCACCCCAGGCAGACAGCTGGCTACTCTGGGATACGTGGCCCAGAGATGAGATATTCAGTTGTAAGTGACACGGCTACAGGCAGGGATGAGCTTTTTGGACTCAGAGGTAAACCCTGATCTTTGGTGCTCAGAAAGAATTGCAGGAGACTACCTCATGTGGGGCAAAGTACCTATAGCCAGGGGACATCTGGGATAGCTTAGAGGAGCTGAAGAAGGGAGCAGAGACCCCGAGAGGATCAGGCATGCAAGCAAGAGACACCCGGCTTGGGTTTGCCACACTCTGGTCCCAACAGGAATTGTCTCTAATGGATACCCCAGAGCAGGGGTGACTGAGCACCAACAACATTCACCTCTGGAAGGTGACAGCCGATTAGAGCTATAGCTTACACTAGAAGATGCCTCTCAGAGAGCCAGGATACTCCCTCTCCAAAGCTTATTCCCCAAGGTAACAAAGTCTAAACTCCACCTTGCCACCACCGCAGCAGCCAATGGCAACATGGTACCCTCCTCTCCACAG
Seq C2 exon
GTATACCACCTGCCCTACTATGAGGCCTGCGTGCATGATGCCTGTGGGTGCGACACAGGCGGGGACTGCGAGTGTCTGTGTGATGCAGTGGCTGCCTATGCCAAGGCCTGTCTGGACAAGGGCGTGTGTGTGGACTGGAGGACCCCAGACTTCTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056817:ENSRNOT00000087497:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(15.1=28.8),PF087426=C8=PU(28.0=26.2)
A:
NA
C2:
PF087426=C8=FE(69.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACTTCGAAACACGCAGCA
R:
CAGAAGTCTGGGGTCCTCCA
Band lengths:
349-1067
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]