HsaINT0106872 @ hg19
Intron Retention
Gene
ENSG00000184956 | MUC6
Description
mucin 6, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7517]
Coordinates
chr11:1015762-1019496:-
Coord C1 exon
chr11:1019275-1019496
Coord A exon
chr11:1018771-1019274
Coord C2 exon
chr11:1015762-1018770
Length
504 bp
Sequences
Splice sites
5' ss Seq
TGCGTAAGT
5' ss Score
9.73
3' ss Seq
AACTTCACCAATTCCCACAGCAA
3' ss Score
4.35
Exon sequences
Seq C1 exon
AACCACCTAGACCAACCACGGCCGTCACCCCACAAGCCACATCAGGGCTGCCTCCCACAGCCACACTGAGATCGACAGCCACAAAACCCACAGTGACCCAGGCCACAACCAGGGCCACGGCGTCGACCGCCAGCCCAGCCACGACGTCCACAGCTCAGTCCACAACACGGACCACAATGACACTACCAACCCCAGCCACATCAGGGACAAGCCCCACGCTGC
Seq A exon
GTAAGTCATGGCGCCATGGGATGCCAGCACTGCCGAAGGCACCCGGTCCCACCACCAGCTCACATTCAGTGATTCAGCCATAAAGAAGACCCCGTATTTCCCAGAGGGCAAGCGAGAAGGCAGCCCAAAAGTGTAGGCTGGAGCTGGAGGCAAGGAAGGCCGCCTGGCACTCACAAAGGCAGGCCTGGGGAGCAGAGGTGCAGGAGGGTGGGGGCCACCACCACGGCCACAGGGAACCAGAAGGGGATAAAGTAGGGCCTGGGTTCCAGTCACAGAGCGGCAGCTGCACTGAAGGAGTCAGCACGCAGCTCAGGGCAGGATGTGGAGCAAGTCCAGGTGAGATGGAGACAATGGGGCAGGCTGGAGTGCCCAGCAGGGGCCATGTCACAGGAACAGAGGCACAGACAGGCAAGAAAAAGGTCACATAGACAAAAGGACGGGCCAGCGGAGGTCAGGGTAGAGAAACAAAAACAATAACGATGACAACTTCACCAATTCCCACAG
Seq C2 exon
CAAAATCGACCAATCAGGAACTGCCAGGAACAACGGCCACCCAGACGACAGGCCCACGTCCAACCCCAGCAAGCACCACAGGCCCAACCACCCCACAGCCAGGACAACCCACGAGGCCCACAGCCACAGAGACCACTCAAACAAGAACGACTACTGAATACACAACGCCCCAAACCCCACACACCACACACTCCCCGCCTACGGCGGGGAGTCCCGTCCCTTCCACAGGTCCTGTCACTGCAACATCTTTCCATGCCACCACTACCTATCCAACCCCATCACACCCTGAGACCACACTTCCCACTCACGTTCCACCTTTCTCCACCTCCTTGGTGACTCCAAGTACTCACACAGTCATCACCCCTACCCACGCACAGATGGCCACATCTGCCTCCAACCACTCAGCGCCAACAGGTACCATTCCTCCACCAACAACGCTCAAGGCCACAGGGTCCACCCACACAGCCCCACCAATAACGCCGACCACCAGTGGGACCAGCCAAGCCCACAGCTCATTCAGCACAAACAAAACACCTACCTCGCTACATTCACACACTTCCTCCACACACCATCCTGAAGTCACCCCAACTTCTACTACCACGATTACTCCCAACCCCACTAGTACACGCACCAGAACCCCTGTGGCCCACACCAACTCAGCCACCAGCAGCAGGCCACCACCACCCTTCACCACACACTCCCCACCTACAGGGAGCAGTCCCTTCTCTTCCACAGGTCCCATGACGGCAACATCCTTCAAGACCACCACTACCTATCCAACCCCATCACACCCTCAGACCACACTTCCCACTCACGTTCCACCTTTCTCCACCTCTTTGGTGACTCCAAGTACTCACACAGTCATCACCCCTACCCATGCACAGATGGCCACTTCTGCCTCCATCCACTCAATGCCAACAGGCACGATTCCTCCACCGACAACGCTCAAGGCCACAGGGTCCACCCACACAGCGCCAACAATGACGCTGACCACCAGCGGGACCAGCCAAGCCCTGAGCTCATTAAACACAGCCAAAACCTCTACATCCCTACATTCACACACTTCCTCCACACACCATGCTGAAGCCACCTCAACTTCTACCACCAACATCACCCCCAACCCCACCAGTACAGGAACCCCACCAATGACAGTGACCACCAGTGGGACCAGCCAATCCCGAAGCTCATTTAGCACGGCCAAAACCTCTACATCCCTACATTCACACACTTCCTCCACACACCATCCTGAAGTCACCTCAACTTCTACCACCAGCATCACCCCCAACCACACCAGTACAGGCACCAGAACCCCTGTGGCCCACACCACGTCGGCCACCAGCAGCAGGCTACCCACACCCTTCACCACACACTCCCCACCTACAGGGACCACTCCCATCTCTTCCACAGGTCCTGTCACTGCAACATCCTTCCAGACCACCACTACCTATCCAACCCCATCACACCCTCACACCACACTTCCCACTCACGTTCCATCTTTCTCCACCTCCTTGGTGACTCCAAGTACTCACACGGTCATCATCCCTACCCACACACAGATGGCCACTTCTGCCTCCATCCACTCAATGCCAACAGGCACCATTCCTCCACCGACCACGATCAAGGCCACAGGGTCCACCCACACAGCCCCACCAATGACACCGACCACCAGTGGGACCAGCCAATCCCCAAGCTCATTTAGCACGGCCAAAACTTCTACATCCCTACCTTACCACACTTCCTCAACACACCATCCTGAAGTCACCCCAACTTCTACCACCAACATCACCCCCAAACACACCAGTACAGGCACCAGAACCCCTGTGGCCCACACCACCTCGGCCAGCAGCAGCAGGCTACCCACACCCTTCACCACACACTCCCCACCTACAGGGAGCAGTCCCTTCTCTTCCACAGGTCCTATGACTGCAACATCCTTCCAGACCACCACTACCTATCCAACCCCATCACACCCTCAGACCACACTTCCCACTCACGTTCCACCTTTCTCCACCTCCTTGGTGACTCCAAGTACTCACACAGTCATCATCACTACCCACACACAGATGGCCACTTCTGCCTCCATCCACTCAACGCCAACAGGCACCGTTCCTCCACCAACAACGCTCAAGGCCACAGGGTCCACCCACACAGCCCCACCAATGACAGTGACCACCAGTGGGACCAGCCAAACCCACAGCTCATTCAGCACAGCTACAGCCTCTTCTTCCTTCATATCCTCCTCGTCTTGGCTGCCTCAGAACTCTAGCTCAAGGCCACCGTCATCACCTATCACCACACAACTCCCCCACTTGAGTTCTGCAACCACTCCTGTTTCCACAACTAATCAGCTGTCCTCCTCATTTTCTCCCAGTCCTTCTGCCCCCTCTACTGTTTCTTCTTATGTGCCCTCCTCCCACTCCTCTCCCCAGACTTCATCGCCTTCTGTTGGCACATCTTCCTCTTTCGTGTCCGCCCCCGTGCACTCCACAACCCTGAGCTCGGGGTCACACTCCTCATTGTCCACTCATCCCACGACTGCATCAGTGTCTGCATCTCCTCTTTTTCCTTCTTCTCCAGCTGCCTCTACTACCATTAGGGCCACTCTCCCCCACACTATCTCCTCTCCTTTCACCCTCTCTGCTCTACTCCCCATATCCACTGTTACCGTGTCTCCCACCCCATCCAGCCACCTAGCCTCCAGCACCATTGCATTTCCGTCCACGCCCAGGACCACGGCCAGCACCCACACCGCCCCTGCCTTCTCCTCTCAGTCCACCACCTCGCGGTCCACTTCTCTCACCACCCGAGTTCCCACATCAGGCTTTGTGTCACTCACCTCGGGGGTGACGGGTATCCCCACCTCTCCAGTCACCAACCTTACCACCAGGCACCCTGGTCCCACCTTGTCGCCTACCACACGGTTCCTGACCAGCTCCCTCACTGCCCATGGAAGCACCCCTGCTTCTGCCCCGGTATCTTCTCTCGGGACACCTACGCCCACCTCACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184956-MUC6:NM_005961:30
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.944
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAACACGGACCACAATGA
R:
AGGGTGTGATGGGGTTGGATA
Band lengths:
350-854
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)