MmuINT0102518 @ mm9
Intron Retention
Gene
ENSMUSG00000048191 | Muc6
Description
mucin 6, gastric [Source:MGI Symbol;Acc:MGI:2663233]
Coordinates
chr7:148826319-148827487:-
Coord C1 exon
chr7:148827272-148827487
Coord A exon
chr7:148826511-148827271
Coord C2 exon
chr7:148826319-148826510
Length
761 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CCCAACCTTTTCTATATCAGAAG
3' ss Score
6.14
Exon sequences
Seq C1 exon
AATACCCTCAAACCACCATGGCTGCCACACCTCCGACATCACCTTGGCCTCCTACATCCATACCGAAGTCAACACCCACAGAGCTCCCAGTGACACAGGCCACATCCAAGCCCACAGCATCTTCCCTCAGCTCATCCACGAAGACCACAGCTGAGTTAACAGAGAGTACCACAGTGACCTTGCTAACCTTAATGCCTGGGATGTCTACCAGCCAAG
Seq A exon
GTGAGTTAAGGCCAGTGGGAAGCCAGGGCACTCAAGCCACGATTGACTCCCACCCTCTGTATAGCACATCCAAATTAGGAGGAGGGCTGTATATTTAAGGAATGAGGGAAAAGGGGGACCAATGGGGCAGACAGAGAGCAGGAAGAGGGGGAAACATCCTGGCTCCCAGCCACATCTCAGGACATAGGACAGGCAGGTACAAGAGAAAAGATCTACGTCAAGGTAAGTGCACAGGAAGGAAGGGTAGAACTGCAGGAATATTTGCCAAAGAGAACTAAGTGCCTCAGCAAGTGGGCAACTCTCAGGCAATCAATCTACCATGGTTAGCAAGCAGAGAGAAAATGCAAGTCCAGGAACATAGCACAGCACATATAACGGACTGTGAGTTTAAACTAAACATTATTCACTGCCATGATCCAACGTGACATCAGCCCAACAGGAAAGTCACCATCCAGCCATGACAAGCCATGCAACTGAGACCACAGAGCTACCTCTCTCAGGAAAGACTACCCTGACCACGCCTCAATCAGGGCCAAGCAGTAGTTTCTCACCACCTAATACAAGTACTTGGACCCAAAACACAGCATCTCAAACCAATCCTCCACTCGTGACGGGGAGCACCCACTCTCTACCCACCATTTCTTTCCCCAATACAAAACACTCTACAAATGTTCCTTCAGAAACATCTACCCAGACAACAACCACTTTTCCAAGCACTCACAGCTCACTAGCATCTGTAAACCCAACCTTTTCTATATCAG
Seq C2 exon
AAGGGACACCGACATCTAAGATTCCCGTGACCCAGACGACTACACACAGGGTTCCATCACCTTCTATAACAAACCAATCTACTACCATGTTTCAAACCACTACTGTCCAGGAAGCAGAAATAACACAGACATTAGCGCCGAGTACTTATACAACCAACGACATAACTAAAACCCAAAACTTGTTCTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048191-Muc6:NM_181729:30
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.965
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCCTCAAACCACCATGGCT
R:
CTCGGCGCTAATGTCTGTGTT
Band lengths:
356-1117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: