HsaINT0106874 @ hg19
Intron Retention
Gene
ENSG00000184956 | MUC6
Description
mucin 6, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7517]
Coordinates
chr11:1012824-1014001:-
Coord C1 exon
chr11:1013899-1014001
Coord A exon
chr11:1013634-1013898
Coord C2 exon
chr11:1012824-1013633
Length
265 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTGTCTTGACTTCTCGGCAGCTT
3' ss Score
6.38
Exon sequences
Seq C1 exon
GGGTCTGCAGTGTGCGGGAGCAGCAGGAGGAGATCACGTTCAAGGGGTGCATGGCGAACGTGACGGTAACCCGCTGTGAGGGCGCCTGCATTTCCGCTGCCAG
Seq A exon
GTGAGTCCACAGGTGGGAGGCCTGCCCCACGTCCACCAAGGTGCTCACAACCCCACCCCAGAGAGGTTCGGGCACCCCACCCAGGCGCCTGCTGCCCCATCAGGTGAGCCACTCTGCGCTCCATCTGCCCAACACCGCCCTGGCCCCTGTGAGCCGGGAGCTCAGCGGGGAGGTCCAGGCCTCTGCGGAGCAGCTGCCCTGGGGAGGGAGGGGCCTTATGCCCCTGCAGCAGTCATGACCCTGCTCTGTCTTGACTTCTCGGCAG
Seq C2 exon
CTTCAACATCATCACCCAGCAGGTGGATGCCCGCTGCAGCTGCTGCCGCCCCCTCCACTCCTATGAGCAGCAGCTGGAGCTGCCCTGCCCCGATCCCAGCACGCCTGGCCGGCGGCTCGTACTCACCCTGCAGGTGTTCAGCCACTGCGTGTGCAGCTCTGTGGCCTGTGGAGACTAGCAGGGTCGCTGCCTGCTCTCCTGGGGCTGAAGGACTGCAGATGACAGACAGGAAAACACCCACCAGCCCCCTTCCCGCTTGTGCCAGCAGCTGCTTTCCTGGTCACCAGGCCTGGCCCCCAAGTGCCCTGGGCCGTGGCTCCCTGGGGCACCGGTTGGAGAGGGGCTGCCAAGCAGGGGCTCAGACTACCACACTCCTGCAGACCCTGAGCCAGCAGAGAGGGACTGAGGCGGACAGTGGTCACGGACCTCCCAGGCACACAGGGCACTCCCGACCACCCCTGCCCACCGTCCAACACCTCCCAGCCCCTGAACTTGGCCCCAGCCCTGCTGGGCCCAGAACCCTGCAGATGAAGCCACAGAGCAGGCGCTCGACCAGACCCATCAGGGGCGAGGAGGGCACGGAAACCTGTGCCGAGATGGGGGCAAGAGGCCCAGGCAGCCACCAGCACAGAGAAGAGGAGATCCCCAGAGTCAGGGAGGGCAGAGGGTGGCAGCGAGGGCAGGGCAGCCGCCCCCGCTCCCAGCCAGGCAGAAGGCCCCCACCAGCACCACACCCATCCCCAGCAGCCTGTCCTTGGGAGAGGGCGTCACCCGGTCAGAGACTCCAAATAAACCGGTTCTTGTCAAGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184956-MUC6:NM_005961:32
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.171 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCACGTTCAAGGGGTGCAT
R:
GTCATCTGCAGTCCTTCAGCC
Band lengths:
295-560
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)