HsaINT0106874 @ hg38
Intron Retention
Gene
ENSG00000184956 | MUC6
Description
mucin 6, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7517]
Coordinates
chr11:1012821-1014001:-
Coord C1 exon
chr11:1013899-1014001
Coord A exon
chr11:1013634-1013898
Coord C2 exon
chr11:1012821-1013633
Length
265 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTGTCTTGACTTCTCGGCAGCTT
3' ss Score
6.38
Exon sequences
Seq C1 exon
GGGTCTGCAGTGTGCGGGAGCAGCAGGAGGAGATCACGTTCAAGGGGTGCATGGCGAACGTGACGGTAACCCGCTGTGAGGGCGCCTGCATTTCCGCTGCCAG
Seq A exon
GTGAGTCCACAGGTGGGAGGCCTGCCCCACGTCCACCAAGGTGCTCACAACCCCACCCCAGAGAGGTTCGGGCACCCCACCCAGGCGCCTGCTGCCCCATCAGGTGAGCCACTCTGCGCTCCATCTGCCCAACACCGCCCTGGCCCCTGTGAGCCGGGAGCTCAGCGGGGAGGTCCAGGCCTCTGCGGAGCAGCTGCCCTGGGGAGGGAGGGGCCTTATGCCCCTGCAGCAGTCATGACCCTGCTCTGTCTTGACTTCTCGGCAG
Seq C2 exon
CTTCAACATCATCACCCAGCAGGTGGATGCCCGCTGCAGCTGCTGCCGCCCCCTCCACTCCTATGAGCAGCAGCTGGAGCTGCCCTGCCCCGATCCCAGCACGCCTGGCCGGCGGCTCGTACTCACCCTGCAGGTGTTCAGCCACTGCGTGTGCAGCTCTGTGGCCTGTGGAGACTAGCAGGGTCGCTGCCTGCTCTCCTGGGGCTGAAGGACTGCAGATGACAGACAGGAAAACACCCACCAGCCCCCTTCCCGCTTGTGCCAGCAGCTGCTTTCCTGGTCACCAGGCCTGGCCCCCAAGTGCCCTGGGCCGTGGCTCCCTGGGGCACCGGTTGGAGAGGGGCTGCCAAGCAGGGGCTCAGACTACCACACTCCTGCAGACCCTGAGCCAGCAGAGAGGGACTGAGGCGGACAGTGGTCACGGACCTCCCAGGCACACAGGGCACTCCCGACCACCCCTGCCCACCGTCCAACACCTCCCAGCCCCTGAACTTGGCCCCAGCCCTGCTGGGCCCAGAACCCTGCAGATGAAGCCACAGAGCAGGCGCTCGACCAGACCCATCAGGGGCGAGGAGGGCACGGAAACCTGTGCCGAGATGGGGGCAAGAGGCCCAGGCAGCCACCAGCACAGAGAAGAGGAGATCCCCAGAGTCAGGGAGGGCAGAGGGTGGCAGCGAGGGCAGGGCAGCCGCCCCCGCTCCCAGCCAGGCAGAAGGCCCCCACCAGCACCACACCCATCCCCAGCAGCCTGTCCTTGGGAGAGGGCGTCACCCGGTCAGAGACTCCAAATAAACCGGTTCTTGTCAAGGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184956:ENST00000421673:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.686 C2=0.035
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCACGTTCAAGGGGTGCAT
R:
GTCATCTGCAGTCCTTCAGCC
Band lengths:
295-560
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development