HsaINT0107450 @ hg19
Intron Retention
Gene
ENSG00000109061 | MYH1
Description
myosin, heavy chain 1, skeletal muscle, adult [Source:HGNC Symbol;Acc:7567]
Coordinates
chr17:10397671-10397990:-
Coord C1 exon
chr17:10397886-10397990
Coord A exon
chr17:10397767-10397885
Coord C2 exon
chr17:10397671-10397766
Length
119 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
3' ss Seq
TCTTGAAAACATTATTTCAGACT
3' ss Score
3.58
Exon sequences
Seq C1 exon
GTTCGTGAACTTGAAGGTGAAGTTGAAAGTGAACAGAAGCGCAATGTTGAAGCTGTCAAGGGTCTACGCAAACATGAGAGAAAAGTGAAGGAACTCACTTACCAA
Seq A exon
GTAAGGAAAATGGCCTGTCTAGGTTTTCACTTTAGTCCACATGGGATTAAAAGTCATATGTATGACAAAATGTAATATTTGTACTTTCAAGAAACTTACTCTTGAAAACATTATTTCAG
Seq C2 exon
ACTGAGGAAGACCGCAAGAATATTCTCAGGCTCCAGGACCTGGTGGACAAACTGCAAGCAAAGGTGAAATCCTACAAGAGACAAGCTGAAGAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109061-MYH1:NM_005963:38
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(3.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGAACTTGAAGGTGAAGTTGA
R:
GCTTCTTCAGCTTGTCTCTTGT
Band lengths:
198-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)