HsaINT0107450 @ hg38
Intron Retention
Gene
ENSG00000109061 | MYH1
Description
myosin heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:7567]
Coordinates
chr17:10494354-10494673:-
Coord C1 exon
chr17:10494569-10494673
Coord A exon
chr17:10494450-10494568
Coord C2 exon
chr17:10494354-10494449
Length
119 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
3' ss Seq
TCTTGAAAACATTATTTCAGACT
3' ss Score
3.58
Exon sequences
Seq C1 exon
GTTCGTGAACTTGAAGGTGAAGTTGAAAGTGAACAGAAGCGCAATGTTGAAGCTGTCAAGGGTCTACGCAAACATGAGAGAAAAGTGAAGGAACTCACTTACCAA
Seq A exon
GTAAGGAAAATGGCCTGTCTAGGTTTTCACTTTAGTCCACATGGGATTAAAAGTCATATGTATGACAAAATGTAATATTTGTACTTTCAAGAAACTTACTCTTGAAAACATTATTTCAG
Seq C2 exon
ACTGAGGAAGACCGCAAGAATATTCTCAGGCTCCAGGACCTGGTGGACAAACTGCAAGCAAAGGTGAAATCCTACAAGAGACAAGCTGAAGAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109061:ENST00000226207:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(3.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGAACTTGAAGGTGAAGTTGA
R:
GCTTCTTCAGCTTGTCTCTTGT
Band lengths:
198-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development