HsaINT0107839 @ hg38
Intron Retention
Gene
ENSG00000092054 | MYH7
Description
myosin heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:7577]
Coordinates
chr14:23429229-23429913:-
Coord C1 exon
chr14:23429775-23429913
Coord A exon
chr14:23429348-23429774
Coord C2 exon
chr14:23429229-23429347
Length
427 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
3' ss Seq
TACTTGCCTTTTCCTTCCAGAGG
3' ss Score
8.65
Exon sequences
Seq C1 exon
AACGCTTTTGATGTGCTGGGCTTCACTTCAGAGGAGAAAAACTCCATGTATAAGCTGACAGGCGCCATCATGCACTTTGGAAACATGAAGTTCAAGCTGAAGCAGCGGGAGGAGCAGGCGGAGCCAGACGGCACTGAAG
Seq A exon
GTGGGAGGCAGGGATTCTTGGGGGCAGCTGTCAAGTCATGGAGGGCCATGTCTGCTCAGCAGTCATCTCTCTTCTCTTTTTTCTTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTTGCCCAGGCTGGAGCGCAGTGGCACGATCTTGGCTCACTGCCACCTCCACATCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGAATTACAGGCATGCACCACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCATCATGTTGGCCAGGTTGGTCTCAAACTCCTGACCTCAAGTGATCCGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAACCACCACACCTGGCCAGCAGTCATCTCTTTACCAACTTTGCTACTTGCCTTTTCCTTCCAG
Seq C2 exon
AGGCTGACAAGTCTGCCTACCTCATGGGGCTGAACTCAGCCGACCTGCTCAAGGGGCTGTGCCACCCTCGGGTGAAAGTGGGCAATGAGTACGTCACCAAGGGGCAGAATGTCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092054:ENST00000355349:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.255 A=NA C2=0.025
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTTGATGTGCTGGGCTTC
R:
CTGCTGGACATTCTGCCCCTT
Band lengths:
255-682
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development