MmuINT0103570 @ mm10
Intron Retention
Gene
ENSMUSG00000053093 | Myh7
Description
myosin, heavy polypeptide 7, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:2155600]
Coordinates
chr14:54989044-54989393:-
Coord C1 exon
chr14:54989255-54989393
Coord A exon
chr14:54989163-54989254
Coord C2 exon
chr14:54989044-54989162
Length
92 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CACCTGCCCTTTCCTTCCAGAGG
3' ss Score
10.3
Exon sequences
Seq C1 exon
AGCGCCTTTGACGTGCTGGGCTTCACTCCAGAAGAGAAGAACTCCATTTACAAGCTGACAGGCGCCATCATGCACTTTGGAAACATGAAGTTCAAGCAGAAGCAGCGGGAGGAGCAGGCGGAACCAGACGGCACTGAAG
Seq A exon
GTGAGAAGCAAGAAAGCCGTGGAGTCACCGAGGGCCATGTCTGCAGAACGAGTATCCACATACTAACTTCCTCACCTGCCCTTTCCTTCCAG
Seq C2 exon
AGGCTGACAAATCAGCCTACCTCATGGGGCTGAACTCAGCCGACCTGCTTAAGGGGCTGTGCCATCCTAGAGTCAAAGTGGGCAACGAGTACGTCACCAAGGGGCAGAATGTCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053093:ENSMUST00000102803:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.298 A=NA C2=0.050
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCTTCACTCCAGAAGAGA
R:
TAAGCAGGTCGGCTGAGTTCA
Band lengths:
174-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types