GgaINT0127778 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:450423-450929:-
Coord C1 exon
chr18:450791-450929
Coord A exon
chr18:450542-450790
Coord C2 exon
chr18:450423-450541
Length
249 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTA
5' ss Score
7.04
3' ss Seq
CTCTTTCCCTCCGTATACAGTTG
3' ss Score
9.3
Exon sequences
Seq C1 exon
AGTGCCATTGATATCCTGGGCTTCACTCCTGATGAAAAAACAGCCATTTACAAGCTGACAGGGGCTGTCATGCACTATGGGAACTTGAAGTTCAAACAGAAACAGCGAGAGGAGCAGGCAGAGCCAGATGGCACAGAAG
Seq A exon
GTATTAATATGTAGAGCTGCCAGTAACAGAAATAGTTACAGAGCTGGCAGGTAGCAGTCAGTTATCTTGCTCCAATTCACTTTTATGAAAACATAAATCTCAGTTTCCACAGTAATCATGTTTCTAAAATTTCTTTTAAGCTACTGAAGTATTGCAGTTACAAAACTTGCAGATCTGTACCTAGCTCTTAGAGAAAATCCACAGTTCACTGATCACTGCCCCTGTGTCACTCTTTCCCTCCGTATACAG
Seq C2 exon
TTGCTGACAAGGCTGCCTACCTGATGGGTCTGAACTCAGCAGACCTGCTCAAGGCCCTGTGCTATCCTCGTGTCAAGGTTGGAAATGAGTATGTGACCAAGGGTCAAACAGTGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023832:ENSGALT00000039878:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.234 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.9=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCATTGATATCCTGGGCT
R:
CTGCACTGTTTGACCCTTGGT
Band lengths:
254-503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]