MmuINT0103177 @ mm10
Intron Retention
Gene
ENSMUSG00000056328 | Myh1
Description
myosin, heavy polypeptide 1, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339711]
Coordinates
chr11:67205913-67206388:+
Coord C1 exon
chr11:67205913-67206051
Coord A exon
chr11:67206052-67206269
Coord C2 exon
chr11:67206270-67206388
Length
218 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCA
5' ss Score
7.87
3' ss Seq
CATGAATTCTGTTTCTGCAGTTG
3' ss Score
6.39
Exon sequences
Seq C1 exon
AGTGCCATTGATATTCTGGGCTTCACTTCTGATGAAAGAGTCTCCATCTATAAGCTCACAGGGGCTGTGATGCATTATGGGAACATGAAATTCAAGCAGAAGCAACGAGAGGAGCAGGCTGAGCCAGACGGCACCGAAG
Seq A exon
GTACCAAACCCAAACAGCCAAAGCCAAATAAAACTCTCCATGTGGGTTCGAAAAGAAAATATAGTCCAAATTCGTGTTTCTTTTGAAGCTGAGCTTCTGGAGAACATACTCAAATTTATCCCCAAAATAGGATGTATAAAGCAGTCTAAACATTCTACCTTTGCATACTCTGGGCCCTGGAGGAGGTAACGTTGGGAACATGAATTCTGTTTCTGCAG
Seq C2 exon
TTGCTGACAAGGCTGCCTATCTCCAAAATCTGAACTCTGCTGACCTGCTCAAAGCCCTGTGTTACCCCAGGGTCAAGGTCGGCAATGAGTATGTCACCAAAGGCCAGACTGTGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056328:ENSMUST00000124516:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.277 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCCATTGATATTCTGGGCT
R:
CACAGTCTGGCCTTTGGTGAC
Band lengths:
252-470
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types