RnoINT0096526 @ rn6
Intron Retention
Gene
ENSRNOG00000016983 | Myh7
Description
myosin heavy chain 7 [Source:RGD Symbol;Acc:62030]
Coordinates
chr15:33652482-33652828:-
Coord C1 exon
chr15:33652690-33652828
Coord A exon
chr15:33652601-33652689
Coord C2 exon
chr15:33652482-33652600
Length
89 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TACCTACCCTTTCCTTCCAGAAG
3' ss Score
9.17
Exon sequences
Seq C1 exon
AGCGCCTTTGATGTGCTGGGCTTCACTCCAGAAGAGAAGAACTCCATTTACAAGCTGACAGGCGCCATCATGCACTTTGGAAACATGAAGTTCAAACAGAAGCAGAGGGAGGAGCAGGCAGAGCCAGACGGCACGGAAG
Seq A exon
GTGAGAAGCAAGGAACCCCATGGAGTCACCGAGGGCCACGTAGAACGTGTATCCCTGTACTAACGTCACTACCTACCCTTTCCTTCCAG
Seq C2 exon
AAGCTGACAAGTCAGCCTACCTCATGGGACTGAACTCGGCTGACCTGCTCAAGGGGTTGTGCCACCCTCGAGTCAAAGTGGGCAACGAGTATGTCACCAAAGGGCAGAATGTCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016983:ENSRNOT00000024186:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.298 A=NA C2=0.050
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTGATGTGCTGGGCTTCA
R:
CAGTCCCATGAGGTAGGCTGA
Band lengths:
167-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]