HsaINT0107908 @ hg19
Intron Retention
Gene
ENSG00000078814 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:15906]
Coordinates
chr20:33565435-33565899:+
Coord C1 exon
chr20:33565435-33565483
Coord A exon
chr20:33565484-33565736
Coord C2 exon
chr20:33565737-33565899
Length
253 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
TTGTCACTGCCATCTTCCAGTGC
3' ss Score
7.4
Exon sequences
Seq C1 exon
TGGCAATAAAAGGGGTAGCAGAGCTTCCTGCCCTCACCGTGGTGCCGAG
Seq A exon
GTAGGTGATCAGGGCTGGGGTTGGAGCCGAAGGGAGGGCAGGAGGGTGGGCGGGTGGGTGAGGGTGCCCATGGGTGGCCGCGAGTCTTCTGAATCTGGAGTGGAGGAAGCCCTGGTGTTTGAGGGTGTGCATGTATGCTGGGCACTCACCCAAGGAGGCTGCATTGGGAGCCAGAGGGAGTCGCCTAGTATCTGGTCTTGTGGGTTGGGGGATCGTGCCCTAGTTCAGCTCCCTTGTCACTGCCATCTTCCAG
Seq C2 exon
TGCCTGCTGCCTTGGGCCGCCTTGAACCTCCAGGGTTTCCAGCTCCTCCTCCTTCACCCCAGTGCCACTGCCATGATGGATGTGAGTGAACTTGGGGAGTCTGCCCGCTACCTCCGCCAGGGCTACCAGGAGATGACGAAGGTGCACACTATCCCATGGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078814-MYH7B:NM_020884:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.588 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAATAAAAGGGGTAGCAGA
R:
GGGATAGTGTGCACCTTCGTC
Band lengths:
204-457
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)