MmuINT0103604 @ mm9
Intron Retention
Gene
ENSMUSG00000074652 | Myh7b
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:3710243]
Coordinates
chr2:155436948-155437484:+
Coord C1 exon
chr2:155436948-155436997
Coord A exon
chr2:155436998-155437322
Coord C2 exon
chr2:155437323-155437484
Length
325 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CTGTCTTTGCTGTCTTGCAGAGC
3' ss Score
12
Exon sequences
Seq C1 exon
CAATAAAAGGGGTAGCAGTGCTCCGCTCCCTGTCCTCACCGTGGTGCCAG
Seq A exon
GTGGGTGATCAAGGCTGAGGGTGTGTGATCAGGTGGAGGGTAGGTGATCAGGGCAGAGGGTGGGTGATCAGGGCAGAGGATGGGTGATCAGGGCTGAGGGTGGGTGATCAGGGTGGTGGGTAGGTTTGGAGCTGGAAGGAAGGCAGGAGAGTGCCCATGGGTGGGCCCAGGACATCAGTACCTATAGCAGAGGATGCTCTTATGTCTGGAGGTGTGCAGTTGCAGGCTCACCCAGGACATCACCCAAGCCTTGTGGTTAGAGGATCATACTCCAGTGTGGGTCTAGCTCCCCATCCCTGAGTTTCCTGTCTTTGCTGTCTTGCAG
Seq C2 exon
AGCCCGCTGCCTAGGACTGCTTTGAGTTGCTGCCCCGGTTTTCAGGTCCTCCTTTTGCACCTCTCGCCACCATGATGGATATGAGTGAACTTGGAGAATCAGCCTGCTACCTCCGCCAGGGCTACCAGGAAATGATGAAGGTGCACACTGTCCCATGGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074652-Myh7b:NM_001085378:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.032
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAAGGGGTAGCAGTGCTCC
R:
GGGACAGTGTGCACCTTCATC
Band lengths:
201-526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: