HsaINT0107930 @ hg19
Intron Retention
Gene
ENSG00000133020 | MYH8
Description
myosin, heavy chain 8, skeletal muscle, perinatal [Source:HGNC Symbol;Acc:7578]
Coordinates
chr17:10323335-10325023:-
Coord C1 exon
chr17:10324980-10325023
Coord A exon
chr17:10323575-10324979
Coord C2 exon
chr17:10323335-10323574
Length
1405 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
CCCGTTTCTCTCCTCCCTAGGCA
3' ss Score
12.64
Exon sequences
Seq C1 exon
AGTGGAACACTTCTGAACCTGCATTTTTATCTGGAACTCCAGAG
Seq A exon
GTAAGACTTGGCTTTATTAATTTATTGATGACAGAGGGGATATAGTCTAATGAAGCTGTGAACAATCCTGAATTATACACCATTTCCATGTTTTTGCAGTTATATCAGGAAAGAGTGTTTCCGAGTGAGTGTTTATAAATGCTAGAAAATAACTTTTTCAAAATGTCTTCTTCTCAGAGACTATCCTCATTTGGGTTCCAAGATTCAAAGACCGTTTAGGACAGAATTAGCTTCAACAGTGAGTTCTCAGCTGTGCTTAGAACTGTCCAGTGGCAATAGACTAGTCCATGCCAGTCTTCTTCTATGGCAAAGCATTGAGGACTTAGGACATTTTATAGACATTTTTAAAGACTCCAGAAAGATTTTTACCTAGAAATATAAATATAAATATTTTAGCTACCTTTGATTATTTGTTATTTGTTGTTAGAAAGACTTATTATTATTTACTTAACAGGTCGCAAGTATTACATCCACCGGGTGTTAAATACCATGACTAATTTAAGAGGAATCCTGCCCTTCCCTAAGTAACTTTCTAATTGAAAATAAAGGAAAAACTCAACCAATCTAACATGTCCACATTGCAGAGGCCTATCTATTAATCAGAAGACAATGGCTTACATGCATGTGATGTACTCTTAAAACTTTTTTCTCTGTTTTCTGGGTGGAAAGAAAAGAAACCCATGGAATTTATGTGGGAAGAAGGGCCTTTGTGCTGAAGCTCTCATTCCTCTGTGGTTAGATCTGTTAACTGACAGCTGAAATCTCTCATGTCAAAAAAGATTTTGGAATCAAGGCAATGCTAAGTCTGTTGGGAACAACCCAAATTACAAAAAATCCAGAGTATTAGAATGTATTATGTTCTTCTAACAATCCACTGAGAGATACAACACCAAATATCAACATAAAGATGTTAAAAATAATTATTTGCTTTATGAGAGAAAATGGCCATCTTAAAAGGCAAAGATTTTTTGATAGCTTTGAAAATATGAACCTTCATTTGAACAAGACAAACTTTCTTTTCTCACCATATGATTGTCCTGGCATATGGCATAGACAAACATTATGCAGAAAGAGGAGAGGAAATTAAATAATGACAGTTGCTATAAAACAATCCATCAATAGTTTTAGCTGTAGAGGTTTCATTCTAATTCAATTGTAGGTACCCTATCCCTGAGGATCAAGATATGTGATCTGAAAAGGAAATTCACAGTCCTAAAAATGAAATCTCAAATTACAGTCTCACTCCATACTTGTCCTTTAGACTATGTTAGAACACTGGGGAGTGCCAGTTTGGAGGAATAGTTACAGCACAGGCTATGTTCAACATTTCTTTCATTTCAAATCCTAACTCACATTTGTGACTTCTGCTTTTTATATCTCTCTCTCCCGTTTCTCTCCTCCCTAG
Seq C2 exon
GCAGAATCCTTTGCTAAATAAATCGCAGCCATGAGTGCGAGCTCAGACGCTGAGATGGCTGTTTTTGGCGAAGCTGCTCCCTACCTTCGAAAATCAGAAAAGGAGCGGATTGAGGCCCAAAACAAGCCGTTTGATGCTAAAACATCTGTCTTTGTGGCGGAGCCCAAGGAATCCTATGTGAAGAGCACTATACAAAGCAAAGAAGGAGGGAAAGTAACCGTAAAGACTGAAGGTGGAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133020-MYH8:NM_002472:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.186
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0273614=Myosin_N=PU(78.6=47.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAACACTTCTGAACCTGCA
R:
GCTCCACCTTCAGTCTTTACGG
Band lengths:
281-1686
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)