MmuINT0103656 @ mm10
Intron Retention
Gene
ENSMUSG00000055775 | Myh8
Description
myosin, heavy polypeptide 8, skeletal muscle, perinatal [Source:MGI Symbol;Acc:MGI:1339712]
Coordinates
chr11:67277418-67279066:+
Coord C1 exon
chr11:67277418-67277461
Coord A exon
chr11:67277462-67278827
Coord C2 exon
chr11:67278828-67279066
Length
1366 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
CTCTTCCATGTCCTCAAAAGCTG
3' ss Score
4.79
Exon sequences
Seq C1 exon
TGAAGGACAGGCGTGACTCTACGTTTTCATCCAGAGCTCCATAG
Seq A exon
GTAAGACTTGGATTTCTTCATTTGTTGATGACAGAGGGGATTTTAGCCTAAGGAATCTGTGAATAGTTCTTAACTATCCGCCATTTCCATGTTTTTAGAGCAGGAGGTGTTTTTGAGGGACGGCTTGTACATGCTGGAAATCATTTTTCCAGAATGTCTTATTCTCAGAGACTACTTACCCTCACTGAAGCCTGGGATTAAAGGGACACTTGGGACAGCATGAATTTTGTCAGTGAGTTATCAGCTGTAACTCTAGTGGCAACCAGCTATTTCATGCCAAGCCTCCTGTATAGCACTGAACACACACACACACACACACACACACACACACACACACACACACACACACACCATGCTTTTCAAACAGTGTTACTTAAAACTGGAAGCATAAACATCTTGTTAAAAACATATCTGAGTTATTTTTAAGGATTCACTTAATTTTTGTGAGAAAAAAAAGAGCAGGTTTTCTTTCCACAGAGTGTTAGCCACTGTGCATAATTTAGGAGCAATTCTACTGAGACCCACAGAAGTCAGTACCTGAGAGTAAAGCTAACAGTCCACCAGTGTAACATGCCTTTGCAGCAGAGGCTCAAGGATCCATGTCCAGTCAATAACGTTTGCGCATGCGATGAACTCTTAACGCTTTTCTTTTTCTGAGAAGAAGGAAAAGAACCCCATGGAATTTCCACTGGAAGAAGAGCCTCTGTGCAGAAGCACTCATTTCTCTGTAGTTAAATCAGTCAAACTGAGAGCTGAAATCTCTCACGTCAAAGGAGATTTGGGAACCAGGGCAGTGCTAAGTCTCCTGCTCCCTAGCCAAAGGATGAAAATCCAGAACCAAGAATTGGTTAGGAACTTCTAACAGACCACGGAGAGGTATAATATCCAATACCAACAAAATGGAAACAGTCCTTTGGTTTTGAGCAACAATGGTCATCTAAAAGATCAGAAAGTGTCTCTGGTAGCTTTGAAAAAATACCAACAGCCTTCATTTGCACAAAGCCATGTTTCCTTCCTAACTAGGTGACTGTCCCAGAGTGTGGCAGATGCAGACATTCTGCAAGAGACAAGAGGATTAAGTAATGACAGTTGCTGTAAAACAATCCGTCAACAGCTTTAACTACAGAGATCACTATAGTTCAGAGGGGAAAGCAGGGTGGAAAGGTTTTCATTGTAATCAAAGCTGTAGGTACCTACTCCTGGGAGTCAAGATTCTGGCGAGGACACTTGCCAAGTTCTAAAACTGGGTCTTCAAATTTTCACAAGATATCAGATTGCAGAAGGGGGTCTCAGCCTGCCACACTTCAAATCCTCATCCACAGTCCTGACTTTTGCTTTTTCTTTCTCTCTTCCATGTCCTCAAAAG
Seq C2 exon
CTGAAACCTCGGCTAAATAAGTAGCAGCCATGAGTGCGGGTTCGGACGCGGAGATGGCTATTTTTGGCGAAGCTGCTCCTTACCTCCGAAAATCGGAGAAGGAGAGGATTGAGGCCCAAAATAAGCCTTTTGACGCAAAAACATCTGTCTTTGTGGCGGAGCCCAAGGAGTCTTATGTGAAAAGCGTTATACAAAGCAAGGATGGAGGGAAAGTGACCGTGAAGACGGAAAGTGGAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055775:ENSMUST00000019625:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.114
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0273614=Myosin_N=PU(78.6=47.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGACAGGCGTGACTCTA
R:
TGCTCCACTTTCCGTCTTCAC
Band lengths:
283-1649
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types