DreINT0180444 @ danRer10
Intron Retention
Gene
ENSDARG00000095217 | zgc:66156
Description
zgc:66156 [Source:ZFIN;Acc:ZDB-GENE-040426-1554]
Coordinates
chr22:249198-249896:-
Coord C1 exon
chr22:249856-249896
Coord A exon
chr22:249411-249855
Coord C2 exon
chr22:249198-249410
Length
445 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTG
5' ss Score
8.35
3' ss Seq
CACATTCTATCTTGTCACAGTAA
3' ss Score
6.21
Exon sequences
Seq C1 exon
ATCTTCTACCTCTGACACGATCTTCCTGGAAACAACAGCAG
Seq A exon
GTATTGCACGAATGATTATATATTGATGATACATATTTTAAAGCAGTGGTTTTAATTTTTAGCAAAAGACAACACTTAATTCTGACTGGCATTTTTAGTTGAATAGAGTAACACATTTATGAGTCTGTGTGTATATTATTGTAGATAAATCAATACACTTCTTACACACCCTCAGTATTAAAATGTATATTTAAAGGGAAAGAAAAATCTCATGAGGCAAGTAGCAGGTTTACAGCTTATTATAATAACACATCGCTCTATTGCCATGAACAAATTGTCTAGACTTACCAATCAGTCTCAAACTTTTTCCAGTCATGTCACAGCTCTAACCAAAACAGTAGAAATTATGTTGCTAAAACAAATAAATCAAATCTGCATTAAATGTGTTCACTCGAGGGAACGCTATCAGATAGAATGACCCTCAACACATTCTATCTTGTCACAG
Seq C2 exon
TAAACCGCAACCATGGGGGATGGAGAAATGGAGTGTTTCGGCCCGGCGGCCATTTACCTCCGGAAGCCAGAAAGAGAGAGAATAGAGGCCCAGAACACTCCCTTTGATGCCAAAACAGCGTACTTTGTGGTGGATGCAGACGAGATGTACCTGAAGGGTACTCTTCAGAGTAAAGAGGGTGGCAAAGCTACTGTCAAAACTCACAGTGGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095217:ENSDART00000075210:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.179
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0273614=Myosin_N=PU(78.6=49.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTCTACCTCTGACACGATCT
R:
TTTCCCACTGTGAGTTTTGACA
Band lengths:
254-699
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]