RnoINT0096588 @ rn6
Intron Retention
Gene
ENSRNOG00000050042 | Myh8
Description
myosin heavy chain 8 [Source:RGD Symbol;Acc:620356]
Coordinates
chr10:53818818-53820496:+
Coord C1 exon
chr10:53818818-53818859
Coord A exon
chr10:53818860-53820256
Coord C2 exon
chr10:53820257-53820496
Length
1397 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
TCTCTTCCTTGTCTCCCAAGGCC
3' ss Score
9.83
Exon sequences
Seq C1 exon
AGCAGGACAGTCGTGACTACATTTTCATCCAGAGCCCCATAG
Seq A exon
GTAAGACTTGGATTCCTTCACTTACTGGTGACAGAGGGGATTTTAGCCTAAGGAAACTGTGAATAGTTCTTAATTACCCACCATTTCCAAGTTTTTAGAGCAGGAGGTGTTTTTTAAGGGATGGCTTGCACACGCTGGAAATCATTTTTCCAGAATGTCTTATTCTCGGAGACTACTTACCCTCACTGAAGCCTGGGATTAAAGGAACGTTTGGGACAGGATGAATTTTGACAGTGAGTTATCAGCTGTACTCTCCAGTGGCCATCAACCACTGTGTGTTAAGCCTCCTGCATGGAATTGGACACACACACACACACACACACACACACACACACACACACACTACACGCTTTTCAGACAGTGTTACTTAAAATCGGAGACATAAACATCTTGTTAAAACCATATCTGAGTTATTTTTAAGGATTCTCTTATTTTTGTGTGTGTGAGAAAAATACAGTTTTTCTTTTTTTAAAGCTGCAGGTATTCCGGGCACAGAGGGTTAGCAATCATGAATAATTTAGGAGCAATTCTACTGTGCTCTACAGAAGTCAGTACCTGAGAGTAAAGCTAAAAGCCCACCAGTTAACATGCCTCTGCCGCAGAGGCTCACTGATCCAGGGTCAGTCAATGACATTTGTGCCTGTGACTAATGCTTAATGCTTTTCTTCTTCTTCTGAGTAGAGGGGAAGGAACCCCAATGGAATTTCCATGGGAGGAAGAGCCTCCACACAGAGGCACTCGTTTCTCTGTGGTTAAATCAGTTAAACTGAGAGCTGAAATCTCTCATGTCAAAAGAGATTTGGGAAACAGGGCAGCGCTAAGTCTCCTGCTCCCAAGCCAAAGGATGAAAATCCAGAACCAAGAACTGGTTAGGAAGTTGTAAACAGCCCACGGAGAGATATAATGCCAAATAGCAACAAAATGAGGACAGTCATTTGGTTTTGAGCAACAGTGGTCATCCAAAAAAATTAGAAGAGTGCCTCTGGTAGCCTTGAAAATACCAACAACCTTCCCTTGCACAAAAGCCATGTTTCCTTCCTGACTAGGTGACTGTCCCAGTGTGTGGCAGATGCAGACATTCTGCAAGGGACAAGAGGATTAAGTAATGACAGTTGCTGTAAAACAATCCGTCAACAGCTTGAACTACAGAGATCGCTATAGTTCAGAGGGGAAAAGCTGGGCAGAAAGATTTTCATTGTAATCGAAGATGTAGGTACCCACTCCTGGGAGTCAAGATTCCGGGGAGGACACTTGTCAAGTTCTAAAACTGGTTCCTCAAATTTTCACAAGATATCAGATTGCAGAAGGGATCTCGGCCTGCCCTGAAGACCACGCTTCAAATCCTCACCCACGTTTCTTACTTTTGCTCTTTACGTCTCTCTTCCTTGTCTCCCAAG
Seq C2 exon
GCCGACACCTCGGCTAAGTAAGTAGCAGCCATGAGTACGGGTTCGGACGCGGAGATGGCTATTTTTGGCGAAGCTGCTCCTTACCTCCGAAAATCGGAGAAGGAGCGGATTGAGGCCCAAAACAAGCCCTTTGATGCCAAAACATCTGTCTTTGTGGCGGAGCCCAAGGAGTCCTATGTGAAGAGCGTCATACAAAGCAAGGAAGGAGGGAAAGTGACCGTTAAGACGGAAAGTGGAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050042:ENSRNOT00000057260:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.129
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0273614=Myosin_N=PU(78.6=47.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGGACAGTCGTGACTACA
R:
TGCTCCACTTTCCGTCTTAAC
Band lengths:
282-1679
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]