HsaINT0108457 @ hg19
Intron Retention
Gene
ENSG00000141140 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:26234]
Coordinates
chr17:34888357-34889931:-
Coord C1 exon
chr17:34889780-34889931
Coord A exon
chr17:34888512-34889779
Coord C2 exon
chr17:34888357-34888511
Length
1268 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTA
5' ss Score
7.26
3' ss Seq
TCTTCTCTCTCATGCCACAGGCG
3' ss Score
10
Exon sequences
Seq C1 exon
TGTTCACACCCTTTCCAGAAATTCTTGGCTGGTAACCGCGAAACCGACTGGAGCAGGAGCTGGGAGAACTGGAGAAAACTGCTCTAATCTCACTTGACTCCAGCTAGGAGCTGATGCTGCATCGTAATAACATTTGCAGAGCGCTTTCACAG
Seq A exon
GTATTAGCCCCTTTAACGCTTCATTTAGCCCCGTGAGATCTGGATATTATCACTCCGTTTTGTAAACGAGGAAACAGAGTGAGGCTTAGTTCTTGGGTTCTGTGCCAGGGGCCTTGGGTTTTGGATTCAAACCCCAAACCTGTTGTGCTGCCCCTCTGGACCTATTGCTTGAGATGAGTTCCCAGTTGAAAGAGCTTTGTTCTCTGGAGCCCTCTGCATGGCTGTCCCTTGGATGGGGTACAGTCAGTGTCCAGGGTCAGGATCTTTTAGGGCTGTAGCACCACACCTTAAGTGGTCCAGCACGGTCCTGATACCTGTTTCCGCCTCAATTGTCCTTTTTCCAGCTTCTATGGAAGTCCCTATCCCTGGGTTCTTTAAAGACTTGATGTATTCAGAGCCTCAAGAAAGTCTCCACCAGGGTTAATCCATTGCAGGCACGCTTCACCCTCAGCCTCATCTCTCCTTGCTAGGGGTGGTGCCAAGGCCTAGAAAATTCCAAGTCTGAGGGTCACTTAACCATTCTTCAAAGATTGGCTTAGGCCCAGCCTCACAACACCCCACCTCCCAGATGGATTCATCTCCCTGAAATCCTCACCTTCTTGAAGTTGACACTGGACCGTTCACCTGATTAGCGCTCCCAAATGGATCATCAACCCTTAGTCGTAGTGCTAACAGTGTTTATCCTCTGAGTGAATACTCAGATTCGTACTTTGTGTGGTGCTGTCAAACCATGACCTCATTGACCTTCACAACCACTCCTTATGAGGCAGATTTAACTGTCCCCATTTTCAAGGTAAGAAATTGAGGTAGGTGATGTGCCTGACCCAGGATCACACACCCAGTGAGTGATTGAACTGTGATATAAACTACCACACCACACCTTTCCTGGAGCAGCGAGAGATGACTCCAGCCTCTCCTCACCAACGACTGAAATAGGATATTTCTGTCTAATGTAGAGGATAGGGCACAAGGCTTCTCTGTCTCCCCAGTGTCTTACTCCTCCTCCATGGCACACTGACCCAGAGGGTTTGCAGCCCCACCCCAACGCAAACCCTAACCCTGTAATAAAACTGGCCCAGGGAGCCTCTGAGGCTCTCATAAAAGTTTCCCTGTCTCCTAATTGGCAAGGGAAAGGACAGGCCCACTCTCCGCCCAGGCCTGCCTTGCATCTCATTTTGGTTGCTTCTGCTAGGTGGGAAGGAGTGAGTGAGTCACTCCAGAAAAGCCCTCACCTGTGTGTGGTCCTTGTCTTCTCTCTCATGCCACAG
Seq C2 exon
GCGCTGGAGTGACTTGTCTGAGATTCCTCCAGAACTGAGCCCTTTGTTGGAACCATACCCCAGCCCATGGTCCCATGACTAGGTGGATAGTACTCCTTGTACCTCCTGCAACCCAGAACCCTGGCTGACCACTTTGAAGGAGGATGCTCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141140-MYO19:NM_025109:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.833
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0006316=Myosin_head=PU(1.1=50.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
ENSP00000268852, ENSP00000268852f10628A, ENSP00000268852f5624A, ENSP00000268852f5625A, ENSP00000268852f5626A, ENSP00000268852f5627A, ENSP00000268852f5628A, ENSP00000409936, ENSP00000438365, ENSP00000465350, ENSP00000466713, ENSP00000466786, ENSP00000467285, ENSP00000467683, ENSP00000468488, ENSP00000468792
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCACACCCTTTCCAGAAA
R:
CCTCCTTCAAAGTGGTCAGCC
Band lengths:
295-1563
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)