BtaINT0097865 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012675 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:13188601-13190123:-
Coord C1 exon
chr19:13189966-13190123
Coord A exon
chr19:13188755-13189965
Coord C2 exon
chr19:13188601-13188754
Length
1211 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTA
5' ss Score
7.52
3' ss Seq
TCTTCTGTCTTCTACCACAGGCT
3' ss Score
10.56
Exon sequences
Seq C1 exon
TGGTCACGCCCTTTTCAGAAATTCTCGGCTGGTAATCCCGAAGCCGACGCGGAACAAGAGCTCGGGGAACCTGGAGAAAACCGCTTCCATCTGACTTGATTCTGGCAGGAAGTGGGCTCCGTATCGTAATAACCAACATTTGCCAAGCGCTCTCAAAG
Seq A exon
GTACTATCTCGTTGATCCTTAACTCGGCCTTGTGAGGTCTGGATATTAGTAGTCCTTTTTGCAAAGGAAAACACGGAATAAGGCTTAGAGAGGTCCTGTGAACTGCATTTTTGAGGGGTTGTGGGCTCTGGATTCTAACTACACAATCTGCTGTATTCCCCTCTGATCCCTTCTCTTAAGACGAACTTTCCATTGAGGGAACTTCGTTGGCCTTGAGTCTCCAGAGCCCTCTGCACAGCTGTCGCCTGGATGGGGTACAGTCAGTGTCCAGAGTGAATGTGTCCACCACAGTCTTGATGCCCTCCTCTGCCTACATTGTCCTTTTTCCTGTTTTCTTGGAGGTCCCCCATTCCTGAGTTCTTTGAAAGGCTCAATGTATTCAGAGTCTCAAGAAACTTTCCTCCAAGGTCAGTCCATTACCAGCACCCCTCATCCTCATCCCTCCTTGCTGGGGATGTGTGGGGCCAGGGAAATTCTAAGAGTCACTCACAGTTTTTCAGAGATTGGCCCAAACCCAGCCTCAAGACACCCCCCTCTCAGATGGACTCTCCTCCTCCAAAAGCTTGGCCTTCTTAAAGCTGACACTGAACTGTTCCACGTAATCAGTGCTCCCGAATGGATCATCCATTCTTCTTACTAACAATATTTCTCCTCTAAATGAATATTCAAATTTGGACTTTGTAGAGTGCTTTCACCCAATTGACCTTCACAGCCGCTCCCTGCAAAGTAGCTTTTGCAAATGAGGAGTGAAGGCAGGCAGGGAAGGTGAGGTGGCTGGTCAGGTGAAAGACTGAGCTATGGTTTCTGTCCCACACAACCGCTTTCCTGGAATATCAAGAATTGACTCCAGCCTTCCTGCCCCACTGAATACTGGCTGTACTAAGATGAAATATTTCTGTGTGCCCGAGAGGCTTCTCTGCTTTCCAGTGTCCTCACCCTCCATGGCACACTGACCCAGAAGATTTGCAGCCCCACCCCAAACCCTGTAGTGAAACTGGCCCTGAAGGAGCCCGAGGAGGCTCTGGAGGCTCTTGTAAAAGTTTCCTTCATTCCCTAATTGGCAGGGGGCAGGACAGAGTCTTCCTCTCTGCCCAGGCTCACCCTGGGTCTCATTTTAGTTCCTGGTGCTCGGTGGGAGGAGCAGGACTGAGTCACCTTGGAGAAACCCTCATCACCTGTATGCGGCCCTTATCTTCTGTCTTCTACCACAG
Seq C2 exon
GCTCTGGGGTGGCTTGTCTCAGAGATTCCTTGGGAGCTGAGCCCTTCGCAGGATCCATGCCCCAGCCTGTGCCCCCATGACCAGGTGGATAGCATTCCTCGTACCCGCGACCCAGAATCCTGGCTGACCACACTGAAGCAGGATGCTCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012675:ENSBTAT00000064679:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCACGCCCTTTTCAGAAA
R:
GCATCCTGCTTCAGTGTGGTC
Band lengths:
304-1515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]