RnoINT0096964 @ rn6
Intron Retention
Gene
ENSRNOG00000002852 | Myo19
Description
myosin XIX [Source:RGD Symbol;Acc:1559961]
Coordinates
chr10:72199286-72200864:+
Coord C1 exon
chr10:72199286-72199413
Coord A exon
chr10:72199414-72200720
Coord C2 exon
chr10:72200721-72200864
Length
1307 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
TCTTCTGTCTCACGATACAGGTT
3' ss Score
9.11
Exon sequences
Seq C1 exon
AAATTCTTGGTGGTAAACTCGAGAGGAGGGAGCAGGAGAACTGGAGAAAACTGCTCTGATTCGATTTGACTTCAACCAGGAGTTGACGCTGCAAAGTAATAACCAGCATTTACTCAGCTCTCTCGCAG
Seq A exon
GTACTTGCCCATAGGAGCCATAATTTTGCGCTTTGCGGTATGGTATTATATCATTGGCAATTGTATAAAAATGAGGTTTAGAGAGCCCCTGTAATACATTCTAAGAGGGCTGTGAGCTTTGGATTCTAACTTCTGCTCTGTTGTGGTCTCCTGATTGGCCTCCCCCTCAAGATAAGCTTCCAGCTGAGTCTCCAGAGATCCTTGGGTGCTGGGGTGCAGTATACAGAGTGATGATGTCTCCAGCACAGTCCTGATACCCTTTTTTTCTTGAATTTTCCCTCTCCCTGTTTCATGGAAGTCCCTAGTCCTGGTTCTTTAAAGGCTAGGTGTGTTCAGAGGCTCAAAAAAGTCTGTATGAGGGTTAATTCTTCAGTCCATTATTAGATGTCCCTCACCCTCGCCCCCCCTCCATTGTTAGGCAGGGATGGGCGCCTGGGACACCCCAAGTCTGAGGCTCACCATTTTTCAGATACTGTCCTCATACAGGTATTCTCAAATAGATTCCTCTCTCCTGGTCTCACCTTGTCTTAACAGTGTAGCCTAGACAGGCCTCAACTTTGAGATCCTCCTGCCTCAGCCTCTTGTGTGTTGAGATCGCAGGCAGATGCAACCAGTCTCAATCTCGTCTTTCGGACAGTGGGCATTCCCTACCTGTTTAGTGTCTCCAAATGGATCGTCAACTCTATGCATAATACTAACGTTCCTGCACAGTGATACGAGATTCAGATCTGTACTGTGCTTTCCAACCTTGACCTCATTGGCCTTCATAACCTCTATGTAAGGTAGATTTAACTGTCCCTATTTTCAAGGTGAGAATCTGGGGCAGTAGAGTTGCCCTGAGGTCACATACCCATCCAGTAACTGAACTATGATTCCCTTCTCACACGGCAGTTCCCAGGGATATCAGTGTTGACTCCATCAGCTGCTGGCCACATTTGTGTAGGGCATGTCTGTCCAGTGGTGATGATAGGGCCAAAGCTGTCTCTCCCTCATGTTTCCATTCTCCGTGGCATACTGACCCAGAAGATTTTGCAACCCCAGCCCTTTACTTACTTCCCTTAAAACTGCCCCTGGCCTTTCACTGTAAGAGAAACATCAGAAAGTATCCCCAGAAGTCAGTCTCTGGAGGCCCTCAGCAAAGGTGCCTTACTTCTTAATTGGCAAAGGGATGCCCAGACGCTCCCTCTCTGCCCGGGCCTGCCTGGTTCTCATTTGGGATCCTCCTGCTTGGTGGGAGGAGCAGGACTGAGTCATCCCAGAGAGGCCCTCACCTGTGTGTGGCCCTTGTCTTCTGTCTCACGATACAG
Seq C2 exon
GTTTCGAGATGACTTGTGGGCGATTCCCACACACCTGAGTCTTCTGCTGGAGTGATGGCCTCATGACCAGGTTGACAGACAGTACTGCCAGTGTCTGTGACACAGAACTCTGGCTGACCACACTGAAGCACGATGCACCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002852:ENSRNOT00000003886:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTCTTGGTGGTAAACTCGAGAGG
R:
TGCTGGTGCATCGTGCTTC
Band lengths:
270-1577
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]