HsaINT0108720 @ hg38
Intron Retention
Gene
ENSG00000071909 | MYO3B
Description
myosin IIIB [Source:HGNC Symbol;Acc:HGNC:15576]
Coordinates
chr2:170387106-170391618:+
Coord C1 exon
chr2:170387106-170387308
Coord A exon
chr2:170387309-170391519
Coord C2 exon
chr2:170391520-170391618
Length
4211 bp
Sequences
Splice sites
5' ss Seq
AGCGTAGGT
5' ss Score
5
3' ss Seq
AAAGTCTCTTTTTTTTTCAGGAG
3' ss Score
9.08
Exon sequences
Seq C1 exon
GCCAATAATCAGACCTTGAGAGAGAAAATTCTACAAGTCAACTCCCTGGTGGAAGCCTTTGGGAACTCATGCACTGCCATCAATGACAACTCGAGCCGTTTTGGAAAATATCTGGAAATGATGTTTACACCAACTGGAGTTGTGATGGGGGCAAGAATCTCTGAATATCTCCTGGAAAAATCCAGAGTTATAAAACAGGCAGC
Seq A exon
GTAGGTGCACTACTTTATCACTGTGTTTTTGCCCTGCAGTAAAAACTGGGAGACTTTGGAAATTTTAATGGTTCAGTTTTCATTCTTGTTCTTAACATTCCCCTACCCTCCCCAAGGGCAAAGAATTATTTAAGCAAAGGATCAGTGGTAGTTTTTGACCTAAAAGAAATTAATGGAAAGAGTACAAAGGGCTGGGGTGGGCGTGCTTTAGGGATGGGTATGCTTGTTTCTCCTGAGTTGGTTGTGTCAGGTAGAATTTAGCAGCATTGCAGACATTTTTTAAAACCCTGAGGCCCCTTAAAATTGAACTTGTTGGTTAAAAAAGAAAAAGACACCAAGAATATTTCACATGTTAATTTTTTCCTTAGATTGAGACAGATAGAGAAAACAATTATTCTGTTTTTAGGGAAAGCATTTGGTAATAGAAATCAATAGCACAGACTTTGATCTGGGTTCAAATGCAGGTTCTGATACTCACTGTGTGACATTGGGCATTTCACTAACCTTCTCTGTGCCTCATCTGTGGAATGGAAATGCTACTAGTGCTGACCTCATGGGTTTGTTGTGAGGATTAACATGTTCATTTATATAAAATTACTTAAAAGAATGCCTAGTGTGGTACACCCTATCAGTGTTAGCTACTCTTCCTATGATAATAATATAACCACTGGTGTGGTACATACTATCAGAGTGTTAGCTACTCTTCCTATTATAATAATAACTCTTCATATAATAATAATAGCTATTATTATAATTGTTAATAATAATAGCTATTATTATTATTGTAGGACACCAGAGTTTCTCAGGAGCATGGCTCCGCACTTCCATATTAATGCATTATTGAATCCCTGCTGTTTGCCAGTGCTGTGCTTTGTGTTGGCTTGTAAGAGCAAACTAAATAAAAAAGATTCTTGTATTCACGGGGCTTAGAGTATGCGGTATATGAGGAAGCAGTAGGGGAGGATCACAGGCATTAAACAAGTAAACTTAAATGTAGAACAATTGTAATAAGCACCAGAAAGCAAAGTAGGTGCTATTAAGGTGAAACGAGAGAAGGGAACGACACATAACCTAGTCTAGGGAGAAAGAGGGGCTCCCTGTATATGAGATCACAGGATCACCAGGAGTTAGGCAACGAGGTGGGGACCAGAGCAAGGAGGAAAAGTGGCAAAGATAAGACTGAGACCAAATCATGCAGGGCTTTGGAACCAGGATAAGGATCTCAAACTTTTTTCTAAGGGCAATAGGAAGCCACTGAACGTTTTCAAGCAGGGGAGTCACCATACCCAACTTTCATTTTGAGATGATCACGCTAGCTTCAATGGGGAATGGATTGGGGGAGATGCAAGGATTGTGTTGACATGATTAGGAGGCTGTTGCCAGATTCATGTGAGAGAGAACGCTGGCCTAGACTAAGGCGGTGGCAGTGGAGATGGAGAGAAGATGAGGAGTCTGAGAGATACTGTGCAAGTAGAATTTACAGGAATTGTTCTGGGTTGAAAACCCAAGCATCTTCCTCTATCATGTACTTGCAGTTTCCTCACGCAGTAGGGACTGGCATGAACATTAAACAAATGAAAGACAGAGTCAGAGTCATTTACGCTTCCCTGTGGCTTTTTGATTAATTTTTATGAGGTCCCCTGCTTTTGTCTCCCCAGGTTAGGGTGGTTTTAAAATTTAGGGAGCTACCTCTGACAGAATGGAAAGCATAGTGTTCTGTGTTCAAATGTAAAGTGGTCTTTTACAAAGATAATGTGAGGAGAGTTCTAGGTCACTTAATGTGATATGTTGCTTATTAATGTAAATATTCATATACCTTACTTTCCTCATATGCAACATGGGCATAATAATGTCAACCTCACAAGGCTGTTATGAGAATTAAATGAGATGAAGAGAAGATGGGGCCTGTCCCAGTCCTGTTCATCTAACTGTTGGGATTCACCCCCTTCTGGGCACACTGTAGGGTTCCTGTGTGGCTGGGTGTGGTCATATAACTGGTTCTGGCAAGTGGGCATGTAATGGCAACCCTCCAGAGTCTGGCACAGTGTAAGATGGGGGCTGCTCTGCCAGCCACAGCCCATCAGTGACTGCAGTGAGCACAGCCCCACCGCTGACCTGCCATGGACATGTACTCTGAGCAAGAACTAAACCTTTATTGAGTTAAGCTACTAAGATCTGGGGGTGTTTATTATCATAACAAAGCCTAGCCAATCTTGACAGATAAAGGGATGAAAATGAAACTGAAGTGATGCTAGGGATGGATGTCGGCAGGAAAAGCTTGGAAGAATTGAGAACTAGATGGATCTGTAGAAAAACTAAAGGAATGTAAGACTAAGATGGGCCAGCCAAAGCCTGCACATGTAACAGAGGTTAAAGAACAAGTGACATTCATCTCAGGCCTTTCGGTTCCTGTCTCAGTGAAGGGTGCCACCATCACTAGATGCTCAAGCTAGAAATCTAGGAGGCAGACTCTAGGTTTCTTTCCGTCACCATCCTCATTCAGTCTATTAGGATGTTCTTTTGGTTGTTTCTCCAGAATATATATAATATTTAAGCTTACCGTTATTCTCCATCACCACTACCATTACCCTATCCAAGCTATTATGCTTTCTCACCTGGACCCCCTCACTGGTTTCCCTGTAGCCATCTTGGCTTCTTATAATGACACTCAGAGAACATGAATCCCTTTAGTCCTGTATCCCTGGCACCTGGTATAGTGCCTACCGTGACTGGCAATTAATATGTTTATTCATTGAATAGTCACATTTTTCTATTTATATATATCCTATAACATGTTGTATATCTTAAATATACACAATAAAATTTATTTTTAAAAAATAAAAATAAGGGCTGGGCACAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGAAGATAGCTTGTTTGAGACCAGCCTGTGCAACATAGTGAGACTCTGTCTCTACAAACACAAAAACCTTAGTGGGGGATGGTGATGTGTGCCTATAGTCATGGCTACTTTGGAGGCTGAGGTGCAAGAATTGCTTGAACCCAGAAATTTGAGGCTGCAGTGAGCTATGACCTCACCACTGCACTCCAGCCTGGACAACAGAGTGAGACCCTGTCTCTTAACTAGATTTATTAGTTAAGTGAACAAGTGAGTGAGAAATGGCAAGTAGAGGCATCTAGAATACAGGGCAGGGATAAAGAATGTCACAGAAGGGCTTTGACAGGATAAACAACCAAAGGAAGATGAGGAGACCCAGGAGAGGCTGAACAGAATGGGGGCCATGCCACAAAGGCGGATAAGGGGAGAAGAAAGACGATTTCTTTTCATGGAGCTAGGTTGACCAAAGAAAAGATTTGCCAAAATCCAAGGGTATCTACAGAAGAGACTGTCCTCCTCCAGAGGAAAGAAGGGGATGTGGAGCAGTGCTTTTCAAACTCTGTGCTAAGGGACCACTTTTTAAAAAAAATCTCCAACCCATTTTGAACTAATACCTTTGTAAAATGCAATGCAAATTAATTATCAGAAAAATTATCATGCTCTTGGATGTCATGGCAATGTCACTTGCTATAAAACGTCTAGGCATGTACTTACCAGTTCCTTCTCTTGTTAGAAACTGACAGCAGTCCACAGGCTATGCTCAGAGTAGCACCTATCTGAAAGGACCCTGGCCAGGGTAGCCTAAAAGAGGTGGATGGCAGGAGACCAGACTAATGAATGACATTTTGAGTAGTACTTTTAAGAATACCAGCTTGGGAGAGTGAAAAACCTCAGTTCTGGACCAATTCTGCTCCCTAACCTGCTGTGAGACTTGCAGGCCACTTCCTGTCTAGGGCTCCAGTAAAGTAGAGGATTTGGCTGATGTCTCTAAGCTGGACCTCACTGTCTCTGAAGCAACATGTGGTACAAGCAGAAGGTAGTAGGCGTTTGGGCTGCAATAGAAAGAGCTCAACATATGTAACTTGAGCTGTTTCCTGTAAATGTCCCATTCTCTGAAACCTTTTGCTTGTCGTAAAGTGTGTTTAATAATGCAACATTATGACAATTACTATACTAATCCTATCACTATTCTGTAAGTGGGATTTATAATATTTAATTGCCTGAAAATACAAATTTGCCATGGAATAATCTTTTGTACAGAAAGGAAATGGTGTAAAATACTTGGGATGGGGAAGCCAGAATATATTATTACTAAAGTCTCTTTTTTTTTCAG
Seq C2 exon
GAGAGAGAAAAATTTTCATATATTTTACTATATTTATGCTGGTCTTCATCACCAAAAGAAGCTTTCTGATTTCAGACTTCCTGAGGAAAAACCTCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000071909:ENST00000409044:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.027
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(11.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development