RnoINT0097194 @ rn6
Intron Retention
Gene
ENSRNOG00000030022 | Myo3b
Description
myosin IIIB [Source:RGD Symbol;Acc:1560313]
Coordinates
chr3:56513513-56519777:+
Coord C1 exon
chr3:56513513-56513715
Coord A exon
chr3:56513716-56519678
Coord C2 exon
chr3:56519679-56519777
Length
5963 bp
Sequences
Splice sites
5' ss Seq
AGCGTAGGT
5' ss Score
5
3' ss Seq
CCTTGATATTTTTCCCCTAGGGG
3' ss Score
10.03
Exon sequences
Seq C1 exon
GCCAACAATCAGACCTTACGCCAGAAGATTCTCCAAGTAAACTCCCTGGTGGAAGCCTTTGGGAACGCCCGCACAGCCATCAACGATAACTCCAGCCGCTTCGGGAAATATCTGGAAATGATGTTCACACCAACGGGAGCTGTCATGGGGGCGAGAATCTCCGAGTATCTCCTTGAAAAATCCAGAGTTATACAGCAGGCAGC
Seq A exon
GTAGGTGCCCCTCTACTCTATCACCGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTGCTCTGCCGATATAAACTTGAAGAACTTGGGAACTTTGAAAGTTCCATCTCCCCTTTGCTCTTTAGTCTCTCCCAATTTTTAAAAGCAAAGTACCAGTGGTAGCCGATTTGCTTTTTAAGATCTAGTCTGTCTTGCATGCGTGTTGTGTTTTCACTTGCATGTGTGTCTGTGCACAGTATGAGTGCCTGTTACCCTAAGAGCCCAGAAAAGGGAGTAAGATCCTTGGAACTGGAGTTACAGATGGTTGCAAATTGCCGTGTGCACACTGGGAACCATACTCAAAGCCTCTGCAGGAGTGCCAAGTGCTTTCAACAGCAAAGCCGTCTCTTCAGCCCTCTGTGGTGGTTATATTTTTGTTTTTGTTTTACCTAAAACGCATTAAGGGGTAAGAGTGCCAAGGGCCAGGGGCAATGCTCTTGAGTTGGTTGTATAAGATAGAATCTAACAATTAATTTGCACATAACTTAAAGATCCACTTTATCCATTAAATGTGAAGTTCTCAATAACGAAAAGGACTGAATATATCCCGTATATTTTCTTTTCACTTGGGGGAGAAAAGAAGGAAATTATATTAAGTATACATTGCTTTTTTGTTGCTGTGATAATCTTATGATGAAAAGCAATGAGACAGGGTTGGCTTTATCTTACAATCCCAGTGGAGACACAGTCCATCATGACGAGGAAAGCATGGTAGCAGGAGCATGAGGCTGGAGGATATCACACTTCGTGGGCACACAGGGAGCCAAGAGTGAGGACGGGAGATCCGGTTAGGCTGTCAAACCTCAGGACCTGCCCCAATGATGCACTTCCTCCAGCCAGGCTGCACTGCCTGAAAGTTTCATAATCTCCCCAGACAGTGCCACCCACTGGGGATCTAGTGCTTAAATATGCAAGCCTGTGGGGGATGATATTTAAAGCACAACACTCTGTCTTAAGAAAAGCATTATTGTCATAGGTAATAATCATCAACAGCATGTTGTTCTGGGCTTGAATGCTGCCTCTGACACTCTGAGACCTTGGGCAGGTCACCGAATGTTTCTGAAGCTCATTTGTGAAATGCGGATGCCACTAGCCATGGCCCCATGGGTTTGTTGGTAAGACCCACAAGTTTATCTGTGTACACTTACTTAAAAGCACTCAAGACAGTGCATGTTAACAGGGTCAGCCACTCTTCTTCTTGTTGGCTTTGATCACTCCAGGGCACCAGAGTTTCTCAGGAGCAGGGCTGCATACAACACAAGCCAGTCAATATTGAATGCCTGCTATATGCCAGAAGAAAACAAGACAAGGTCCCTGTGTCCACAGTGGGTGTGGGGGAGGGGTGAGAGGCTCACAGTGGTTATAGGAAGATGTCAATAGAGCAGATGTGATCAGTGTTCGGAAGCAATAGCTTTCAAGTAAGTGCTGGGGAAACAAACCAGTGAAGAGGCCACACTATCTGGTTTAGGAAGAAGAGTTGTGTGGGGTTCACAGAGGAAAAGGGGAGTTCTACTCTATCTACTCAGGGAGGAAAGCATTTATTCTGCTTATACTTCCACATCAAAGTCCAACATCAAAGGAAGTCAGAATGGGATCACAAACAGGACAGACACCAGGACTGACGCAGAGGCCATGGGGGAGTTTTCGGGCTTCTTCCCATAGTTTGCTCAGCCTGCTTTCTTACACCAAATGCACCACAGGCCAATATGGTAAGAACGTTTTTTTCAGTGGGTGTTCTCTTTTCCTAAATGACTCTGCCTTGTGTCAGGTTGACAAGAAACCAGAGACAAGGCAGTACACCTGGGGGTCCAGAAGGAGAGATGAGTTTCCTGGATTTAAGATTTCCTGAGATCTGTGGATCCCTTAAGAGTTAGCCAACACGATGGGGTTGGGAGTGCAGAGAATGAGAGGGGGGGGCACTAAGAATGGATTACATGGGGCTTTGAATATTTTCTAAAAAGACTAGGAAACTGGAGGATGTTTTCAGGAAGGGGAGTGGTCACCACTAACTTGCATTTTGAAATGCTAACTCTAGTTCAGTGGGCCAATGGAGATGCGGAGAAGCCGAATGAATAAGGGTAGTAGAGTGGAGAAGAAGAGAGACGGGGTAGTTAGATACTTGGGCAGATGAGAGCCACAGGCCTAGGACCAGCTTAAGAATCCAAGCATTTGTGTGTTTGGCTGGTGGGATATGGCATGCAAGGTTAGATCTCCAGCACACGCGCACACACACACACACACACACACACACACACACACACACGCACACGCACACGCACACGCACACGCACATGCACACGCACGAACACACATAGGCACGAATGCATGCATGCATTCCTGTACACACGCATGCACACACACATGAACATATGTGCACACCAGAAGCACCAAACACCTTCCTCCATCAGAGAATTGCCTTGCACAGTAGACACGGGTCTGCACAGTGAACACAGGAATGAAGAAATGTGAAGCTACAAGTGGTTGAAGCTTCCCTGTAGCTTCTTGATCACTTGGGTGAATCTCTCTGTCTCTTCCTCCCCACACTGGTATGATTTTAAAGTTGAAGGCACTGTCTCTGACGGAATAGGCACTGCTGTGTCCTGTGCGCCATGCTCTTCCAGTGGAATGTTGCTCCTAGCCGTAAATATTGTCTCACCTTACTTTTTTCATGAGTCATACAGGCCTAATAACACCAACCTCCCAAGGTTGTTAAGAGAATTGAATGGGATGGAGAGAGGGTAAGGCTTCAGACACACCCTTAGTACACACCTTTAATTCCAAACATTAATTTTATTGTGCTAGGAAATGTTCGTGAACCCCAAAAGACCAACAAGGAGCAATTCCGATGCAGTCACATTAAGATCTCATTATTCAAGCTTGAGGTTGGGCCACACCACTCTCTCTGATGTAGCAGAATGGAGGGGATAGCCCTAAGCTTAGTTTCAGGCAAGCATTTATAGAGACAAGAAAAGAGGTATCTAGCCTGACACACATCTTACTGGGGTCCATTATGGTCTTTAACATATTTGGCTGCTATAGGGAGCCAAACTATAAACTTAACTTCTGTTTTCCTCCTGATTGATGATGGCTAGGAAGTGAGGTGTCGGGGGCAGGCTTGTCACCTAGAAGTGCAGATCTGTTGGGGAATAACCTGGAAACTGGTGCTAGATGTAGGTCTTGTTGGATGGTAACCTGGAAACTGGCCCTAGATACCTGCCTGTTTTCAACCTTAGCTGAGGTTCTCTAAGATGGTGTCTGAACCCAAAAGATTTGGTCTCAATTGAGGGACAGACAACATGACAATTCAGAGAGGGATTTGACAGGATAGGATATACCCAAATCTTACAGGAACAGACAGGAAACAGAAGCTATTTAAGAAGTTTCAATCAGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGTGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGGAAAAAAAAAAGTTTCAATCAGTTCAGTTCAGTGAGTTCAGTTGATTTGAGTTGAAGTTGGTTCAGGCAGTTGAGTTTAGTCAGTTGAGTTCAGCCCAGTCAATCAGCACAGGAGGCAGTGCAGTGGAGTTGAGTTGAGTTCAGTTCAGTTCGTGGAGTTAAGAGGCAGCTTTTAGCAGCACGGTTTTACAGACAAGTTACAGGGAAAACAAACCAGATACAGGTTAAAGCAGAAGGAGCCAGAATGAGAAGGAGCCGGAAGAGTAGAGTAGACTGCTACAGTTCATTTGAGGCCGCGCAGAACAAGTCATTCAGAAGCTGAGAGAAGCCAGACTGAGTCAGTCAGCTTGGAGAGGAGTTTGAGCAAGAACACCTGAGTTGAACCAGCCAGCCAGCGTTCAGAAAGAACTAGAAAAGGACAAGCTTATTCAGTAGTAAGCCTCCGAGGCAACAATCACATGGGGTGAATTAAAGTTACATCTACAGTGGTGGTTCTACCCTTCACTGGGCACATTTGAATATCTCGTTTCCTGGTCCCCCATCTCTGGATGAAGTTATGTGAAGGTCTGACCAATGTACATTGAATAAACAACCTTTCAGAGGTTGGCCAAGTGTAAGGCAGCCCTTTGAGCCCTCGTGTGCAGACTTCTGTCTCTGCTTCCTGTCTGTCTATAACTCCTTACAATTCCCACTCAAACTTCAGGGCTTCACTGTAAAGTTATTTCTCTGGAGTCTTTGCCCTGACTTGACATAAAGTGATTTCCATTATCAACATTATTCTTTATCCTATGCCCCTGTTTATTTCTTCTAAAGCCATCCTCTCAAGCTCTCCTCTTAGTTCATTTAGTTCCATCTAGAAGAAATGCTCCAAAAGGGTGTGAATGCTCTTAGAACTGTTTCTCTGGTGTTCAGCATTGTGCCTGCCAAAAATGGCGTTCAATACATTTATCAGTTGAATAATAAAATTTTAAAACTATGTGCGTTTTGTACCACACTGGATGCTTTAAATGCACGCAATGAGATTTGTTTTAAATAATGACAATAGCTTGACATGGTGGCGTGCACCATGTAATTCCAGTGCTGGGGAGGTTGAGGCAGGAGGATCATGAGAAATAAGCCAATGGCTGGAATGTTGCTTATTGGTGGAGTATTGCCTAGAAAGTAAAGATCTTGGATTCAACCTCCTGTGATTGGGGGAAAAAAACATAAATAAAACAATGAAGTAATGTTCTGTGAACGAATGAGAAATGGCAAGTAGAGGTATCTAGAACACAGTGATAAAACATCCTGAAGAGACTGAGGAGGGCAAAGATACCTGGGAGTGGATAAAGGGAGGAGCAGGACCAAGCCATAGACGGGGAAAGAGGAGAAGCACACCAGGCTTCTTCCTATAGAGTGAGTCTGGTGGGCAGTAGGGTTTCCTGCTGTAAGTATATCAGCCTGAAAGGCTGCCCTCTTCCAGAGGGAAGAAAGGGATCGGAGGCAATACTTTCCAAATCTGCCCTCGGTATCAGTTTCCAAAGCTCCCCGACCCATGGCGATCTAGCAATGAAATTTCATTATCAAAAGGCAATGATGCTTTTGGTGTCGTGGCACTGCCATTTGCTGCACTGTATCTAGGCGTGTGCTCCTCGGTTCCTTCTGTGTCATTTTCTGACACAGGGAACATGCTGGGCATCCTATCCAGTGAAGCTTATCGGATGAGGGCAAGGAATGGAGAGACGGGGGTTTATGGCAATTGTTGCCCTCGCAGAGAACCCAGCTTCATTTCTCAGCACCCAGGTAGTACTTAGCAAGTTTCTGTAACTCTAGTTCCCAAAGATCCAAAACCTCTTGGTCTCCATGGGCACTGCATGCACACGATGCACAGAGGCATGCTTGCAAAATACCGGCTACACATTAAAAAAGGAAAAACAAGCAAACAAACCAAAACAACACAGGATGTGGACAGCAACAGCCACCAGGGACTGAGGAATGGCGTTTATAGCAGTGTCTGAAAGCATAGCACCCTGGGAGAGTGCAAACCTCTGCCCCAGAGGAATTCTTTCTTTCTGGAGTGCTGAGGGACTCCCACACATTTCCTACCTTTCCTACCATAAAACAGGGTATCTGGTTGGTCACTGTAGGCCAGACTTCTCACCCTCTGAAGCTTGGGGCTTGGGTCACCAACGCACAGGACCAGGAGCTTCATGGAAAGATTGTTGCATACAACTGAGTTGCTACTTGAATTAGTTCTGGAACATTCTTCAGTTTATAGTGAAGATACATGTGTTTGGTAAAGTGAGGTTGTGATGATTTATATTTCGTCTTTGGGATGAAACGTATTTAATTGCCCGCTTATGTAAATTTGTTGTGAAATAATATCTTGCACAGAAAGGAAATGGAATCAATTATTTAGGTCTGGAAAAGCCTGCTATAAATTCTACAAATAAAGCTTCTTCCTTGATATTTTTCCCCTAG
Seq C2 exon
GGGAGAGAAAAATTTTCACATATTTTATTATATTTATGCTGGTCTTTATCACCAAAAGAAACTTGCTGAATTCAGACTTCCTGAGGAAAAGCCTCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030022:ENSRNOT00000037188:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(9.5=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]