HsaINT0108764 @ hg38
Intron Retention
Gene
ENSG00000197535 | MYO5A
Description
myosin VA [Source:HGNC Symbol;Acc:HGNC:7602]
Coordinates
chr15:52372124-52375460:-
Coord C1 exon
chr15:52375304-52375460
Coord A exon
chr15:52372364-52375303
Coord C2 exon
chr15:52372124-52372363
Length
2940 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GCCCTTATCCTTTTCTGCAGATA
3' ss Score
10.7
Exon sequences
Seq C1 exon
CTATGCTAAGTTTCTGCGCAGAACCAAGGCAGCAACCATCATTCAAAAGTACTGGCGCATGTATGTGGTCCGCAGGAGGTACAAGATTAGACGAGCTGCCACTATCGTTCTTCAGTCTTACTTGCGAGGCTTCTTGGCCAGAAATAGGTATCGCAAG
Seq A exon
GTGAGGCATTATTTTCAACTTTGTTTATTCATTCTATTAGCATTAACCAAATTTCACATCTATACAGAGTACCACAGGGGCTACAATGAAGGTAGGAACTGTATGGGGACAACCAGCTATTGAAATGCATATTTATTTATTTTAAAAAATTCTTTTTTAGAAATAGGATCTCGCTCTGTCACCCTGGCTGGGGTGCAGTGGTGCAGTCATAGTACACTGCAGCCTCAAACTCCTGGCCTCAAGCAGTCTTCCCACTGTGGCTTCCCAAAGTGCTGAGATTATAGGTATGAGCCATTGTGCACATGCCCAGCCTGAAATGCATTTTAAAATACTAAATAATCACATACAGTTATTAACAAAACAATGGGAAAAAAACTTTTACCTCCTTCTTTCTCTTTGTTTATATAATTTGAAAAAAAAAGTATGTTAGTTTACTGTGGCTGCTATAATAAATTATCACAAACTTGTTACCTTAAAACAGCCAAAATTAATTCTCTCAGAGTTCTGGAGACCAGAAGTCCAAAATCATTATCAATGGGACAAAATCAAGTTGTCAGCAGGCTGCTCTCCTTCCAGAAGCTCCAGGGGAGAATCCATTCCTTGCCTCTTGCAGCTTCTGGTGGCTGCCAGCATTCCTGTGCTTGTAGCCACATCAGTCCAGTCTCAGCCTCTGTTTTCACAGCATTTTCTCTTCTGTGTATCTGACTTGACTTCTCCTATCTGCCTCTTATAAGAATAATTATGATAGCATTTGGTTCCACCCATGTGATCCAGGATAATCCTCCCATCTGAAGACCCTTAACCTAATCACATCTGCAAAGGCCCTTTTTCTGAATAAATAGCATTTGCAGGTTCCAGGGATTAGCACCTAATTTCCTTGGGGCCCCCTATTCAGATGACTACAGAGAACTTTGAATAGATAGAATATATGACAAACAGGTTAAAGGTTATTCCAAGAATGAGACAACCTTGGAAGAATTTACCATGGTGAAGAGGAGGCAAATTATAACATTAATGTGGTTAAAATTGTATTGACAGATACAATGCTCCAAAAGTTTTTGACAAATAATCTTACATCTAGCAATAATTAATGGGGTCACCAGAGTAGTCTTAATTATCACCTGTGACCATTGATGAACGATTTTTATCTCTTTCATTTTGGCAAGGTTTGGAGTCTATCCTACAGGCTATATTTCAAATCAGTGAGAAATACAAGCCTGGATATTAGAGCTCTATGGACATCACCATTAGAAGGAGCATTAATGGGGTGATTTGGGTCTCTAAGCACAGACAGTATATGGGTGTGACCTAGGCCCTATTTATTTATTTATTTATTTATTTATTTATTTTTATTTGAAGTGATTTTAGACAACAAAAAATTCGAAACTGGTGAGGCTTGAATGAGTGTATTTAATAGCTGTGTTTTGAAGATAGCTACTCCAGATCTTTCTGCTCACCCCTCCTTTATGTAGTCTCATGCTCTTTCTATATAAGCGTGAGATTTTAGGGAGGAAAGAGGTTTGAAGTTGCTTTTCAGATACACCAAACTAGTTACCTTCCTGTGTTCCTCACTACTTTCCTTAGGAACATCTGAGCTGGGTTTTGAGGTCACTGGTTTAGCAGTGGCAGCCTCCGGCCAGCTCAGGCTCCCACTGTGACTGGACAGGGTGGAAGGTGGTAGCGTAGAGGCTTGCTCACATGTAAGCCAACAGCCATCACATTAGTGCTCCTTCTAGCTGTATTTCAGGTCCAAGGTTCCCCTTCATGAGATTTGGAGTGGGGGGGTCTTAAAGAGAGTACAGGTGTTGATTAATTTCTCTCACTCATGATGAAAGTGAGATTGAAAATGGAAGCTCTGATTAAATGCTGTTTCCATTTGACTAAAATTACAAAAATGGACCCATGTCCAAAGTTACATGGGAGAAGCAAATGGAACAGGAAAATTGGCATTAATAGTTTTATTTATCCAGTCACTGTGCCTGGCTACCTCTTCTTAAAATTCAAGAATTTCTTCTCCATCTTTCCTAGAAAATGTTTACACGGTGTCTTTTTGGTGCTCTTTAGCGACAACAAATTCATCTAATAAGGCAAACTTTTGTTTGTTTATAAGTTTAGGGAAATATCATTTTTTTTTAGGAAATGTAACATAAAATCAAAAGTAAGATTAGTTTGTTTCACATCTTTTTACTTTTACCTTTCATTTTAAAGCCCCATCCCTCCTACCTTTGAATCCCAAAAGTGGATCCTTGCTACATTTGAAATAGCAATGGAAAATCCTCACTAGAATGGTATTCCTCAAATGTGGTAAACAAGAGTGTCATCTTTTAGTTTCTAAAAAAAAAAAAAATCAATAAATCAGTACAAACTTTTTAGTACCCCAAGTGTTGGCCTCTACAGACAGTTTGCTGCCCATACCCCGTGTCCTCATGCACGGGCCTAATAATGCATAGTGAGGTGGTATCAGCAGTCAGGGTGGTGGGGATATCTCTTATTTTAGTAGCACATAGTTTACAGGATGCCTGGTTCTGTTAATTTTATAGAGGATCATCTGTTGCCAACAGAAATCATATACTAATAAGAAACCTAATGTATTTTTTCTTTCTTTTTATAGTTGTTTTTCTTTTGGTAATCTGGTGCTTTTTATTTAGACAGCTTCCAACTCTATATTCTGCTTAGAATTATACACATAATATGTGCATATGACACATTTTTATGTATGTTTCTGAAATCACCTTCTAAAGTCTACTTTTCAAATCACTTTTAAAAATAATTTTGTAGCCTCCATATATCTGTGATAAGTATAATCTACATAGTACATTGTCAATTCAACTTTTATGTCTTTTCCTCTAGGTAATGTGTGGATTTTCAGCCCGACATAGATTGATAATCATGAGTGTAGTCCAGGGTCTTGACATTGCTTGCCCTTATCCTTTTCTGCAG
Seq C2 exon
ATACTCCGTGAGCACAAAGCAGTCATCATTCAGAAGCGAGTCCGGGGCTGGCTGGCCCGCACACACTACAAGAGGAGCATGCATGCCATCATCTACCTTCAGTGCTGCTTCAGGCGGATGATGGCCAAGCGTGAGCTAAAGAAGCTCAAAATCGAGGCTCGCTCAGTGGAGCGCTATAAGAAGCTGCACATCGGCATGGAGAACAAGATCATGCAGCTGCAGCGCAAAGTTGATGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197535:ENST00000399231:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061222=IQ=PD(14.3=5.7),PF0061222=IQ=WD(100=39.6),PF0061222=IQ=WD(100=39.6)
A:
NA
C2:
PF0061222=IQ=WD(100=26.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development