RnoINT0097227 @ rn6
Intron Retention
Gene
ENSRNOG00000058866 | Myo5a
Description
myosin VA [Source:RGD Symbol;Acc:3143]
Coordinates
chr8:82092829-82095492:+
Coord C1 exon
chr8:82092829-82092985
Coord A exon
chr8:82092986-82095252
Coord C2 exon
chr8:82095253-82095492
Length
2267 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TTATCTTCCTTTTTCTGCAGATA
3' ss Score
12.31
Exon sequences
Seq C1 exon
CTATGCTAAGTTTCTGCGCAGAACCAAGGCAGCAACCACCATTCAGAAGTACTGGCGCATGTATGTGGTCCGCAGGAAGTACAAGATTAGACGAGCTGCCACCATTGTTCTTCAGTCTTATTTGAGAGGCTACTTGGCAAGAAATAGGTATCGCAAG
Seq A exon
GTAAGACACTGTTCTCAAGGCTGTTCATGCATTCCAGCAATACTAATCACATTCTCCATCTGTACTTAGTGCCATCTAGATGGCTGTGGGCAAAGAAGCCATGTAGACAACACAGAAGAAAATATACGTCCCATTTCCGTTTGTCTGTACAGCTTTTAAAGTTGAATAAGTGAATGTGAAACGAAAATCACAAACTTGGTTGCTAAAAACAATCGTGCTTATTTTCTCAGCCTTCTGGAGGCCAAAAGTCCAGAACCACTGGACTATAATCAGGATATCAGCAGTATCACATTCCCTAAAAGCCCAAAATATAAGCATTCATCGTTCCTCCCAGTGGTGGCCTACAATCCCGCACCTGTGACCACATTGCTTCTATCTCTGCTCTATCTTTATATCATCTGTCTCTTATGAAACAATGATGGGGCTGGTTAGATCCCCAGAACCCACAGCATGGAAGGAAACAATCAGCCGACAAGTATGTTCCCCCACAAAATAATTGTTTTTAAAGATTTTTTTAAATTATGGTATTTAGATCCCACCTTCATAATCCAGGATAACATCCCCATCTCAAGATCTTTAACCTAGTCATATCTGTGAAGTCCCTTTTTCCAAATAAGATCACAATTACAAGTTCTAGGTATTAGGACTTTATTGGGGACCATTATTCAGACAGATATAGAGAGATAAGCTACACAAATAGGTTAAATATATGACAGAAGATAAACCTAAGGAGAAAAACTTAGAAAAATTCATTATGGTGAAGAGGAAATAGATATATTTGTATGTTTAAAGTTATATTGACTAGAATGTGGTACGTCTTTAATTCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAAGTTGTACATACATATGTAGAGACCAGAGCAGGACTTCAGTTACCTTGAGACAGTGTCTCTCACTAAACCCGAAGCTCATTGTCTTGGCCAGGCTAGTCAGCCCGCACGCAAACTCCCAAGATCAGCTTGTCACCATCTCCCAGTTCTGGGGTTATGGAGATAAGTGTCTATTCTTGGGTTTTTATGTGGGTGCTGGGGATTCACACAAAGATCCTCCTGTTTGTATAGCAAGCAATTCTTATGCACTAAGCCATCCTCCAAGCCTCACAAATCTTTTTTGCATGTGGCACCAGGGTTGAATTCAAGACTGCATGCATAATAACCATGCACTTGTCTACTAAGCCACACTCTGTCCTCAAAGTGACCTTTGTATCTTAGAATAATTGATGTTACTCTGTAGATCAGAGATCACCAACGAATCTTTTTAAAAACATGTGTGTGTGTGTATGTATGTATTAAAAAGACTATCATGACTTTATGTTACATTTTCTTGCTTTTAGCTTTCTCTTTTAAACTCTGTTCCTTTACCTTGGCATCCGTAACAGATTCCTGCTGCATTCAAAACAGCAGCAATAGGAAATCCTAGAATGATACACCTGAAATGTGGCCAACAAGTACATCATCAACTTTAGGCTGAGGAAGGTGGCACACACCTTTAATCCCAGCACTAAATGGGCAGAGGCAGTTGGATCTCCATAGTTTTGAGGCTAGCCTGGTCTACAACCAGACCAACCAGGGCTACCTAGAGAGACCCTATCTCAAACAAACAAAAACAATGTCACCTCCTGTGTTCAAGGGTGGAGTCAATAAGTCATTAATAACCTTTCACTATATCAGCCAACTTACTGGCTGTCCCCATGACCTCATGTACCAACTTAGCACACAGAGACTCAGTGCAGTGGCAAAATCTATTTTAATAACACATAGTTCATAAAGTACCTAGTTTTTAGTTTTATAAGACCTCCTACCAGCAGAAATCATATACCAGTAAAGAAACTGATGCATTTTTTTGTGTTCTTCATAGAACTTTTTTCTTTTGGCAATCTGGTATTTTTTTATTTAGATTGCTTCCAATTCTGTTTTGTTAGTAGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCCCACACACACAATAAAATGTAATTAGAAAAGTGGACATTGAAAGTTTATTTGGAATTTGGAAAGGACTATACTGATATATTGAGATATTGCCTTTATATTTCTATGATTTATAATCCACATAAGAACACAGTTGATTTAATTTTTTCTTCCTCTCGAGGTATGGATTCTCAATTTGACACACTTAGGCAGATAGACTTGAACTTTGAGTCTAGTCTAGAGTCTCAGGTTATCTTCCTTTTTCTGCAG
Seq C2 exon
ATACTCCGTGAGCACAAAGCAGTCATCATTCAGAAACGTGTCCGTGGCTGGCTGGCTCGTACACATTATAAGAGGACCATGAAAGCCATCATCTACCTTCAATGCTGCTTCCGGCGGATGATGGCCAAGCGTGAGCTGAAGAAACTCAAAATTGAGGCTCGCTCTGTGGAACGCTACAAGAAGCTCCATATTGGCATGGAAAACAAGATTATGCAGCTGCAACGCAAAGTGGATGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058866:ENSRNOT00000079535:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061222=IQ=PD(14.3=5.7),PF0061222=IQ=WD(100=39.6),PF0061222=IQ=WD(100=39.6)
A:
NA
C2:
PF0061222=IQ=WD(100=26.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]