HsaINT0111509 @ hg19
Intron Retention
Gene
ENSG00000189149 | NCRNA00169
Description
CRYM antisense RNA 1 (non-protein coding) [Source:HGNC Symbol;Acc:34405]
Coordinates
chr16:21327205-21329912:+
Coord C1 exon
chr16:21327205-21327291
Coord A exon
chr16:21327292-21328182
Coord C2 exon
chr16:21328183-21329912
Length
891 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
CTTTTTTCTTCTTCTTCTAGAGG
3' ss Score
10.46
Exon sequences
Seq C1 exon
AGTTGAACTTCCTCTCTTTTTAGAAGAATGGATTTCTCGGAGTCTGAAAAATTTATGGTTCTTCTCTGGAAGAATTTTATTTTAAAG
Seq A exon
GTAAGTTGAACTACCTATAGGGTTATTACAACAGCTCAGTGGCCACAGGGGGAAATTCTGACAGCTTGATCCTTGAATTTCAATTTTTACTGTTTTACTTTTCTCAGTATGAAGGCTAGGTTATCTCTTCCAAATATAGAGTTCACACAGAGAGAGATTAATAGCAGGATGTTATGTAGAAAGGAGAAAAAAGTCTAGGAAACTGCTGCTATTATAGAGTAAAGCTGTGTTTTTGGCAATCTATATATTCTTTTATGAAGTATCTTTTATCTTAATATAAAAGAATTACAGTTATACACAATACAGGACTATTCAGCCATGAAAAAGAATGAGATCCTCTCATTTGCAACAACATAGGTGGAACTGGAGGTCATCATGTAAAGTGAGATAAGCCAGGCACAGAAAGACAAACTTTGCATGTTCTCACTTATTGGTAGAAACTAAAAATTAAAACAATTGAACTCATGGAGATGGAGAGTAGAAGGATGGTTAACAGAGGCTGGGAAGGGGTAGCTTGGGGTAGGTAAGGGGGAAGTGGAGATGTTTAATGGGTACAAAAAAAACTTGAAAGCATGGATAAGGCAGTATTTGCTAGCACAACAGAATGACTAGAGTCAAAAATAATTTGATTGCACATTTAAAAATATCTAAAAGAGTGTAATTGGATTGTTTGTAACACAAGGGATAAATGCTTGAGGGAATGGATACCCAATTTACCTTGATGTGATTATTATGCATTGTGTGCCTGTATCAAAATATCTCACGTAACCCATAAATATGTATACCTGCTATGTACCCACGAAAATTAAAAATTAAAAAATTCAAAAATGAACTTGCAAAGTTAATAACCTCTTAGGGCAATTAACATAATCTTTTTTCTTCTTCTTCTAG
Seq C2 exon
AGGCGGCGATGTATTGCTTTAGTTGTGGAAATGGTCCTCACATTTCTGTTTAGTGCTGCGCTTTTGGCAACACGCTCTGTTATTACTATAAATAAGAACGGACCTTTCGATTTTGCTGCTCAGCCTGTCGATGAAGTGCCTTTCTACATCACAGCTTCCTTAATTTCTCCTTCTCCTTTGGAATTGGCTTACGTGCCTTCCAGAAGTACTGTGGTTCAGGGTATTATTGAAAGAGTGAAAATGGATTTAAACCCTCAAATGAAAGGTTAGAAATTAACATTTTCTGAAAAAACATACAGAATTACTAAATCGATTTAGTGAAGACATACTTACAACCTTATTAACTGGTTCTTAACCTCCCAAGTAAAACATCGTTGGAATCCTCATACTAAGTATAAATATTATGGACTTTGTTAAACTTGAAAGTTAAATTTATATAAAATATTTTGTTCATAGAGCCCAGAACAAATAGTAATATTTCAAAATGAGATGACCAATTATTATTATTATTCTAAGTTGTTATCCAGTTTTGTGATACTGTTTTTTCTATCTGGTTGTGCTTCTTGAACCTGGGTAAGTATACCTCCAGGGGTGTGTGATTTTGTGCCACAGGTCAGTGGTCAGTTATTTAAAATAATGTTTTATATTAAAATGTGGTGTGAGTAATATAGGAAGGCTTTAGAAAACACTTAAGCTATGTAGAATTATTTTAAAAGCCCTCAGTCTCTCACTTACCTTCATATTCCCGGATCAGTTTCTTACCTCTTTCTCTTAGAGGTAAATACTGTGAGAAGTTTAGGTCGGCCGGGCCCAGTGGCTCACGCCTGTAATCCCAGCATTTTGGGAGGCTGAGGTGGGCAGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGCAAAACCCCATCTCTACTAAAAATATAAGAATTAGCCAGACATGGTGGTATGCACCTATAGTCCCAGCTACTTGGGAGGCTGAGGCATGCGAATTGCTTGAACCCAGGAGGAGGAGGAGGTTGCAGTGAGGTGAAATTGCACCACTGCACTCCAGCCTGGGTGACAGACCAAGACTCTGTCTCAAAAAAAAAAAAAAAAAAGTTTGTGGGCATCTCCCTAGCACACCTCTCTCTACACATGTGCGTGCATGTGCACACACACACACACACACACACACACACACAGTCAGGCAACTTTTCCATCTTTTTTTGTCTTTCAAGAGATATGAGAGTCCTTGAGAGTAGATGCCATCTCAAAGCATTCTTTTTTGTTGTTTGCTTTTTTTTATCAAAGCATTCTTTAAAATAAAGACTGAAACAGGAGAATATGAAGTTCCCAGTAATTTTTAAATTCTACAACAAAAATATCTCAACAAATTTAAAGTCTATTATGGGTTACTCCAATAGTCGCTTTGGGTTACTCAAAATATTTTCTGATTTCCACTCTGATGTCTTCTTTGATGCATGGAATTTCAAAATTTTTAGAAATGTGTTGCTGAACTTCCAAACACTGGGGGCTTCTTATCTTTCTGTTGTTGATTTCTGTTTTAATTTCCTTTCATCAGAGAGTATACTCAATTCCAGTTCTTTGACATTTTGAGAACTGTTTATGACTAGTACATGGTATATTTTGATAAATGTTTTCTGTGAATTTGTAAAAACTATGTGTGCTATAGGTTTTGCTTCTGGTGTTCTATAAATGCCACCTGGGCAAAGTTGGCTAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000189149-NCRNA00169:NR_026675:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAATGGATTTCTCGGAGTCTG
R:
TAATTTCTAACCTTTCATTTGAGGGT
Band lengths:
342-1233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)