BtaINT0001320 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MHK9]
Coordinates
chr25:19346217-19347669:+
Coord C1 exon
chr25:19346217-19346276
Coord A exon
chr25:19346277-19347413
Coord C2 exon
chr25:19347414-19347669
Length
1137 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TGATTTTGTTTCTCTTGTAGAAA
3' ss Score
10.13
Exon sequences
Seq C1 exon
ATGGATACCTTGTGGCTTAACCAGTTTGCCATCCTCCTCTGGAAAAATTTCATATTAAAG
Seq A exon
GTAAGTGGAGGTATCTTTGAGAAATGGCTGTAAAGCCTAATGAATTTGAAAATAAAATTTTTTTAATTTATTTATTTTAATTAGAGGCTAATTACTTTACAATATTGTATTGGTTTTGCCATACATCAACATGAATCCGCCACGGGTGTACATGTGTTCCCAATCCTGAACCCCTCTCCTACCTCTCTCCCCATACCATCCCTCTGGGTCATCCCAGTGCACCAGCCCCAAGCATCCTGTATCCTGCATGAAACATGGACTGCCGATTCGTTTTATAAATGTTTCAATGCCATTCTCCCAAATCATCCCCCCCCACTCTCCCACAGAGTACAAAAGACTGTTCTATACATCTGTGTCTCTTTTGCTGTCTCGTATACAGGGTTATCATTACCATCTTTCTAAATTCCATATATATGCATTAGTATACTGTATTGGTATTTTTCTTTCTGGCTTACTTCACTCTGTATAATCAGCTCCAGTTTCAACCACCTCATTAGAACTGATTCAAATGTATTCTTTTTAATGGCTGAGTAATACTCCATTGTGTGTATGTACCACAGCTTTCTTATCCATTCATCTGCTGATGGACATCTAGGTCGCTTCCGTGTCTTGGCTATTATAAACAGTGCTGCGATGAACCTTGGGGTACATGTGTCTCTTTCAATTCTGGTTTCCTCAGTGTGTATGCCCAACAGTGGGATCGCTGGGTCATCTGGCAGTTCTATTTCCAGTTTTTTAAGGAATCTCCACACTGTTCTCCATAGTGGCTATACTAGTTTGCATTCCCACCAACAGTGTAAGAGGGTTCCCTTTTCTCCACACCCTCTCCAGCATTTATTACTTGTAAAATTTTAATAATTCCTTCATTTCATTTCAGTTTATGGGTATTTTTCCTTATCGTTCGATGACTGAAGGTAGATTTCTAAATCTGAAGAGTATCAATAGGGCAAACCAATAAAATCAATAGTGAAATGAGAAAAGGGTGAAAAAGACAATCCAGAGAACCATTCATTTTGTAGAATGAAGTTGAATGATATATATGTGTAATTGTATCCATGTATGTACACAAGTGTAAATACACACATACACACATATAATACTCTAAAATTAATTAGTATGATTTTGTTTCTCTTGTAG
Seq C2 exon
AAACGGAAGATGGGGTCTTTAATTGTGGAAATTTCCATGACAGTGCTCTTCTGTTCATTGATTTTGCTTCTGCGCAAACATTCCAAAAGGGAATTTACACAAGCTACTCTTTTCCAGTCTCTTCCCTTGAATAAACTTCCCGCTTTCCTCACTAATAAGAAAAAGGACTATGAATTGGTTTACGTGCCTTCTGGAAGTGATGCGGCAAAAAATATTACTGAGAAAGTGAAAGATGATTTAAATGCCAACCTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006717:ENSBTAT00000008832:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF126982=ABC2_membrane_3=PU(19.1=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATACCTTGTGGCTTAACC
R:
AGGTTGGCATTTAAATCATCTTTCAC
Band lengths:
310-1447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]