MmuINT0007680 @ mm9
Intron Retention
Gene
ENSMUSG00000062017 | Abca14
Description
ATP-binding cassette, sub-family A (ABC1), member 14 [Source:MGI Symbol;Acc:MGI:2388708]
Coordinates
chr7:127350831-127351556:+
Coord C1 exon
chr7:127350831-127350952
Coord A exon
chr7:127350953-127351306
Coord C2 exon
chr7:127351307-127351556
Length
354 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GCCCCCGTGTTTTGTTGCAGAGC
3' ss Score
10.13
Exon sequences
Seq C1 exon
GTGACCTTAAGTGTGTTACATCTTCATTTCTTAAGCATCAACCTTCCATCCTTCCTGGTAAGATGGATTCACTACAGATGAAGCAGTTTTCAGTCCTCCTGTGGAAAAACTTCCTTCTAAAG
Seq A exon
GTGAGTGGTGATGTCTGTGGGAGCTCGATGGGAAGTCTGTGTAGCCAGAGGAAGAACTAACAGCTCACTAACTACATGGATTATAGTTGATTTTCTCTCTTTTGTTCCAAGGCTGGGGTAGCCCTGCTTAGTCTGAAGAACAGCCTGAGAGTCAACAGAATCGGTGTAGGAGAGTGAAACATAGGCAGTATAAGGAAGACAGTCGGGGAGGAGGGCATTCTCATTGTAGAACAAAGGAGAATAATATAGGTCTCTGTTGTGTTAATTAACCCATGGCTCCACACAGGAGCACGCACATGCATGTGCTCATGTGTTCACTAACGTGCCCCCCCCCGCCCCCGTGTTTTGTTGCAG
Seq C2 exon
AGCCGGAATGTGGTTGGCTTAGTGGTGGAGATCATCTTGATATTTCTGTTGTTTGTATGGACTTTGACTGTACGCAGAATTTCAAAGAAGACATCTATAAGTGATGTGATTTTCAATCCTATTCTCTTGACATTGCCTAAATTCCTTAATGAAAACTTTGACTATGAATTGGCTTATGTGCCTTCTGAGAGTAATGCAGCAAGAAATATTACTGAGATGGTGAAAAAGGATTTAAATTTCAACTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062017-Abca14:NM_026458:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF126982=ABC2_membrane_3=PU(18.2=95.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCTTAAGTGTGTTACATCTTCA
R:
CCATCTCAGTAATATTTCTTGCTGCA
Band lengths:
342-696
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: