HsaINT0112602 @ hg38
Intron Retention
Gene
ENSG00000119408 | NEK6
Description
NIMA related kinase 6 [Source:HGNC Symbol;Acc:HGNC:7749]
Coordinates
chr9:124291979-124302054:+
Coord C1 exon
chr9:124291979-124292088
Coord A exon
chr9:124292089-124301935
Coord C2 exon
chr9:124301936-124302054
Length
9847 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCC
5' ss Score
9.16
3' ss Seq
GCCGCTGTTTTCTGTTGCAGTTC
3' ss Score
10.51
Exon sequences
Seq C1 exon
CCAGCCCAGAGAGGCGACCCAGCTCCCTGGAGGCCCAGGCACCTCATGTCTGCCCTCAACCCAGAGTGGAGCAGACCTTCCCTGGAGCTTCTCAGGAGCCACTTCAAAAG
Seq A exon
GTACCCTGACTTTCTCTGCCTCCTGCTGTGGGAACCGCTTGCTCTTAGGGGTGTGTCCAGCGAGGGATGGGGAACCAGGCCCCAGGGACCTCCAGGGCTGGAGCTCCAGGGACCTTGACCTGGCTGCACCTCTGCCACCCACCGCTGGCTCAGCCACCTGCTGGTGGGGCTGCCCATTCAGCCAGTCCCACCAACCTGACAGGACCTTTGCCACTAGCCTGGGACAGGGGTGGCTGCTGATGGCTGCTTTCACATTGAGTAATCCCTGGGCTTGGCCAGAACTTCTGAGTTTCCAGGGAAGCAGAAAAAGCAATTCTTTCTCTAGGGTGGGTTTTGTCTGCCCCTTCCTGCCTGTGGGAAGGAGAGAAAATTAGGGGAGGCCACGGGCTTGAAAGCTTTCCCTGCATGGAGGCCACTGGATGGGATTCTAGATGCTCGCCTGGGACCCAGGGTGAGTTTTTTACAAACACCGAAGCCCTCCAGCCCCCGGGGCTGTTCCACTTGGTCCTTCTTCCACTGTCAGTCAGCAGGGTAGTAGCTGCGGTTCTGCTCTGAAATCCATCCCTTCCCTTAAGCCCCAGCCTCTCCCCAGTGGTCCCCCTGGCATGAGTTGGTCTCGGGGGGCCAGGCTTCTCCCTCCTGGCCTCAGGTGTTTCTGTACTGAGTCAGCAACCAGTTACCCAGCCTCTCCTCTGCCAACTGCTGGGGCCATGGAGAGAGTGGTTTAGTCTCTACCCTCAAGGACATTTCCATGTTCAAGGAGAAGAAGACACATGAATTAGAGACAGCACGGGGGAGCAGGCTGTGGAGCTGGGAGTGACGGGGTGAGTCCAGGAAGGCTGCCTGGAGGAGATGCCCAGGAGAGAAGTTTGCTGGGAGGCAGCTCATTTCCGGCAGGAGGAGCAGAGCCTGCCAAGGCCTCGAGGTGAGAGCAAGATCATTTCCCAGGCAGGCAGGGGTCTCTGGGATGGTGGGCCTGCTAGCGGGCCTGGGACTCCTAGAGTGAGACCGCAGCTCTCCCCAGCTGCATTGTGGTCACCAAGGATCACCTCAGGCAAATGATTAAAATGCAGACTTTGGAGAGGGTTGGATCTGAGTTCAAAAACAGGCCATGCTGCTTATCAGCTGCATGAGCTCGACAAGTCATTTAACTTCTCTGCACCTCAGTTTCTTCATCTGTAAAAGTGAAGGGCTTGCAGACCTCACAGCAGGGATGTGCTGAGCTGCTGCCTGCAGTGCCCGACACAGAGGAAGCACTCAGCAGATCTCAGCTTCATCTTCAGGGAGGCTGGGAGCGGACCCAGCCTTGACCAGGTCCCAGAGTCAAGAATCTTCTGGGCAGAAGCCAAATGCTTTGTTGCTCCTTTAACTGAGAGACAAGATGTTTACAGCTTCTGCATTTTTTTTCTTCCAGAATTGGGTTTTATTACCTGAGGAGGAAGTGAAAGGTGATTGGGATGCTCCTCGATTTTCAAAAAGGCCCTGGGAACCCTGCAGTGTGCGGCCCAGTTGGTTTTGAATCTCCAGTGACTTTTGTCTGATCTGTGACCACAGGGATGCTGAGCCCTCAGCAGAGGTTTCTTGGGGTTGCAGGAGGGTGGGAAGAGCCCCCTCCACCTACTAGTCAGAGATTCATTCTGCCAACGCCCCCTGGGTGGCCCTCTTTTCACCGGGCCTGGGTGAGGCACTGGAGGTTTACAGATGACCGCGAAGGTCAGTCCCTGCCCTTAAAGGCTGGCAGAGGAGGCAGACATGCTGACAAAGGAAGCAGTTTGTGTCCTCAACAGCCCACCTTCAGGGAGAAACCTGTGTAGATGCCACCAGATGGGAAAGGGAAGAAGGGGCCTTGGTGCCCCCTGGCTGCCCACTGTGTGCTCACAGAGTCCTCGCAGCCTCCCTGCAAGCTTGGGCTGTTCCTTTTTGTGGATGGGGACGTTTAAGGCTCAGGGAGGGGACGGGACTTCCCCAAGGTCCCACAAGAAGTGCCAAGACTATGGCTGGGCATGGTGGCTCACACCTGTAATCCCAGCACCTTGAGAGGCCAGGGTGGGAGGATCACCTGAGGTCAGTAGTTCGAGACCAGCCTGACCAACATGGCGAAACCCCGTCTCTACTAAAACTACAAAAATTAGCTGGGCGTGATGGTGTGTGCTTATAATCTCAGCTACTCGGGAGCCTGAGTAGTGTGTCAGTTCCTCCCTGCCAGCCAGTCTGCCTGGGCGTGGTAGTCCTTCCAGCCCCTGGGCTTGTGCTAAGTTTCTTTCTGTAATTGCTCCATCTGGCTGGTCTGAGAAGCAGGTTCAAATGGCAGGAGAATCACTTGAACCCAGGAGGCGGAGGTTGCAGTCAGCAGAGATCGCGCCATTGCACTCAAGCCTGGGCGACAAAGCAAGACTCCATCTCAAAAAAAAAAAAAAAGTGCCGAGATGAAGGAGGGTCGAGAGATCTGGTCCTGGCAGACAAGTGGGACTTTGCCCATTGAGAGGCACCGATGGGTCTTTAGTCCAAGGCTGGTGCATGGAATGACATGGAAGGACCAGGGTGCTGTGTTGCTGGGGAGGGGGACCGCTCATTTAATATGGCTGCACGCAAGGCCTGGGGGATGTTGGGGGCAAATGCATGAGGGCAGGCTCGTGTCAGGTGGTCAGGGAATGGCTTGCTCCGGTGTGCGGACCTTTTGCTGTGGAGTTTCAGGAGAGATTGGCAGGTTCAGGCTTGTGTGTTAGGAAAACCTTTCCATGGTGGGCTGGAGGCTGGGCTGCAGGGGAGTGTGGAGGCTGAAGGTAACTGTAGGGACCCAATGAGAAGGGACAAGGCCAGCACAGAGTGGAGGCCCTGGGGTGAGTGAAGACATTTGGAGGAAGAATGGTTGGGACTGGATGAAGACCAGGTGTGGGTCCTGGGGGAGGGCGAGGCATCCGGAGGCTACAGCAGCCCTGTTTCTGGGTGGGCACCGTGTGGCCCCCAATCAGCTGGCCTCCTGATGCTGCAGGCCCACCCTGGGGGAGGCCCCACCACCCTGAGGAAGGGGGCAGCGGGGAACCTGTCTGCATGGCCACCTTCCAGGAGTGGCTCATGGTCCTGCATCCCTGCACCTTAGAGCAGCCAGGCTTCCGCTGTCATGGAGCTGCAGAATCCGGGCAGGATGCTTGGCTTTGCAGGTGGAGAGCTGGGGCGAGCGTGAGGGAACACAGGACCCGGCCGGAAACCAGACTCCATCTGTGGCTTGTCCCCTCCAGCTTGACAGGCCCCCATGACTCTGGCCTGAGATCGGGCTGCTTCCTGTCAAGTGATGAATGGGCAACGTCTGCTTATCCTGAGACCAGACAAGAAGCGGGGCTGGGGCTGGGGAAGGGCCCAGCAGCCAGAGCCACAGCTCTGGGCCAGTATTCATTCAGTCAGTCATTTATTCACACCCTCTTCCAAGGCAGTTTGGACCAAGGCAGACTTGGTTTCGAGTGTCAGTTCTGCCTGCCGCCTGCTGTGTGACCTGGCACCCGTCACTCAACCTGTCTGAACTTTGGTTTCTCTTCTGAACAGTGTGGATCATAGCAGGGCCCGTCTAGGGGTCTGTAAGTGTGAACGAGGTATGAGCGGCACTGGGCACCTGCCTGGCGCATGTGTGGTGCATGCTCTGTTGGCGGGGGCTGTTATTCTGGTGCTCCCTGCCAGCCAGTGTGCCTGGGCGTGGCATTCCTTACAGCCCCTGGGCTTGCGCTGAGTTTCTTTCTGTAATTGCTCAGTCTGGCTGGTCTGAGAAGCAGGTTCAAATGGCAGCTCTCTCCACTGTGTGGACTCAACTTTGGCAAGCCATGTTTCTCCATGGAGCCTTAGTTTCCTCATCAACAAAACAAGGGTGATGGTACTTTGCAGGTGTCTTGGGAGATGCCGTTTCACCCGTGGATGTTGGCTGATGTTGAAGTTGGTCCGGCCTTGACCCAGCCAGTGGCCAGTGCAGTGAGCTGTCCTTGCCGGGCCTCCGATCTTCAGCTCCCTGGGGCATGTGTCGGGCAGTGGAGCCTCTGCAGGCTGGCTGAAGGCCCCAGGCAGTGGGCATCCATCCTCGGCTTCTGCCACCAGGAGCCAGCTGGACCAACAGACATCACCCCTGGTGCTGGCACTGGTGCTGCCAGTACCATTCGCTCGGGGCGGAGAGAAAGCTGTGTGTGCCTGAGTGTGAAGCCACAGGGACGGCTTCCTGCTTTAGGGAAAACAACCTGTGAAGCTGTGCCCTCGGCTGGAGGCACAGAGGAGGGGCCTTGCTCAGGGAAACTGGAGAGGGGAGTACAGTGTCTGGCCAAGGCTGACCTCCAAGGCCAGGAGTGGGTTCTCCCTGGGCTTGGCAACACCTGTCAGTCTGGGAGCCACAACTGCCTTTGCCACGTCTACCCTCTGCTTCAGTGGACAGAACGAGCCTGGTGGACATTAGATGACCCCTGATCATGCCTGTGCACGTGCACACACAGGAGCAGAAGAGGCAGGCAGGACACACACCGTTACCACCTCCAGGGTTCAGAGCAAGGAGAGGTGTAAGATCCAGTATATGAATGCACTTCCATGCATGGACCCCAGTACACATGGACCCTTGCAAGCTCATGCCCCCAAACCTGCTCCAAGCAGGGTCCTTGGACAGAGCCCTCCTGGTGTCTGAGGTCGTGCTTCACTGGCCGGGCCACGATGAGCCACCAGTCTCCATGAAGTGTGGCATTTGACAGGAGGCACAGGAATGACTTCCCCCTAGGTGAAGTTTCCAAAAATTCAGAGGCAAGGGCCCAATGACAGCCTTGGTCAGAAAGGCCACTTGGAACCTCAGAGCCAGCCCATTACAGCAGCCGATCCCTTCCAGCAGGTGCCTGGATTAAAACCAAGCGCTCATGTCTCCCTAGGGTCACAGCCCACATTAGTGAGAGCCTCATCCATGGCCGGGCAGGGTGCGGCACAGCAGCTGGCTTTGCAGAGGCAGCCACGGCTCACGTAGATGATGAAGACGTTTGCTCCAGAGCAGTCCTAAAGAGGCCATGCTGCGTAGGACATAGAGCAGCAATCTTGGGTCCAACAGCCCCAGCTGTGTCATTTACCAGCTGTGTTACCTGGGGCAGGGATGACCCTGGGCAAGTCCCTGCCTCAGGCCCCATGTCTGTCACATGGAGGTGATCACGCCTCCATTGTACAAGTGAGGGTTAGCTTCAATAGCTAAATAGCCTCATAGCTAAAGCCTCAGAGGTCCCTTCCCATGTGCCAGGCTCTGTGCTAAGGAGTTTACAGTGACCCTAAGAGGAAGATCTGACTGTTAGCCCATTTTCCAGATGAAGAAACTGAGACGCAGCATGGTTAGATGAAACCGGGCCAGGACCTGGACTCCTGCAGTCCAGCTCCCCGCCAGCCTCACTGAACCCTGAGGCTTCTCCCAATCTGGTCCCTCGGTGCCTGGGGACACACAGCACACGGCAGCCTAAAGCCAGGAACCTGAGCTGGGAAGCCTCACTGTGCAGCTATCCACAGTGTTTTGCAAATGTAGGGCCCTTGCTTGAGGCAGAAGAAAAGCCCTCTTTGAGGTGGTGTTCAGTGTGGCCTGCAGCTCTGGGTCTTGCATTCCATGGATTTTTGGCCCCTGACTTGGGCTTGGCAGCTACTACCTCATTGTTCTGCAACTTGGCAGGAGCCGCGGGATCCCGGGGACGGGCAGTCCTCAGTGTTACCCCGAGGTGCCTGCACGCATGTGCTAAGGGTCTTTTCCCTGCTCCGTGTGGCTCGTCCTTCCACGTCCCCTTTGCCTTGGCCTTTCTGCATCTGAACCCCCTAAGAAGCAGTTTCTGACAGGAATTTCCAGAGCACAGGGCTTGGGTTTCTGTTGGGGTGTGGACCAATAGAACAAAATGCCCTAAAATCCAATACCCATGGAGAGCCCCAAGAGGCAGTAGATTCCTTGGAACAAAGAGGGAGTTTAGAGTCACTGAGATCTGGATTTGAATCCTTTCTCTGCAGCTTATCAGCCTAATGGCATCGAGCCTCTTCCTCTGAGCCTCGGTTTCCCCATCTATAAAATGGGTCTACCAATAGCCCCGAGGGTGAATGGGAAAGACCTGGCCCACAGGAACCCTCATCCCTTCCTTTCTCCCTTCCTCCTTCCCCCTCGCGCCTCCCCACCTCCTTCCCCTCAGCAGGGACCCTCTCTGGCTCTCGGTGGGTAGGGGCTTGCAGAGTCCTCCGTGGCTGCTGCTTTCCTAGAACAGGGAACATCAACACCTGCCGGCTCCTCCCTGGAGGCTAACGGTGCCGCAGGTTCCATTAGGTTCTGAACAGAGCAGCTCGTAATGACTGGGGTTTGGCAGCAAAGGCACCACTGGGGTAGACAGTGGTGCTGCATCAGCTTGCTGTGGTCAGTGGGGCAGAGTCTCCGGGGGCTCCTGCCCCTGGGGACCCTGTGGAGGAAATGGGCCCTTGTGGTCCGCCAGCCCTGAGATCACCCCTGTGCATCAGCAGCACAGGCCCCATTCTCAAGTGGAGAGAGGGCCCATTCGGGGTGGAGCCAGCTGGAGAGATGATGGTGTTGCTGTGTAAGAACCTGTGGGGAGTGCAGTACCGTAGTTTTGGACAAATATGCAGTTGTTGGTTCAAATCCTGGCTCCTTTTGTCTGTGATCCTTGGGACCCGGGCAAATCTCTTAACCTCTTCGTGCCTCAGTTTTCTCATCTGTGAAATGGGACCATAATAGACCTTACCTCATGGAGTTGTTGACAAAATGAGATGGGCTAATAGAGGTGAAGAGCGTAGGGCAGGGCCCAGCATGATCAGGGCCCTGCAATTATTAGCTCTTATTCCCGGTCCCCCTTGCACTGCTCCTGGAGCCCTGCCCATGTGAGGCCACAGGTGAGCTCCTGAGAGTGTGCAGACCATGGCATCTGGCTGCAGCTGTTGGAGAATGCGGTCAGCGCCACGTGGGGAGGGCAGGAATGACATTCCCAAGCACCCGCTAGGCTCCTCCCCAGTGGGATTTGCCCAAGGTCTCAGCTGGTGAGTGACAGGGTCTAGATTCCACTGCCACAGTTTCCAGTACATGGGAGGCCCCAGGGCAGGTGGGCGGGTAAGCCGATGTGTGCATGGGTCTCGCAGGGGTGACCTGTGGGCCAAGGCTGGTGCCTTCTGAGATAAAGATGGAACCTTCTCACTGAAGACAGTTCTCCACTCTTTCCCTGGAGGTCTCCCTAAGGGCAGAGGACAGTGAGCATGTCACCCTGAGGGGTCTAGGGGTGCAGCTGGAAGCAGCTGCAGAGCCTGCAGGAGGCTCAGTTTTATCTTCAAATTCATGCGCATTTTACATTCTGCTCTCTCTCATATTCCCCCTAACAAAGATGCCTGGGGAAGGTGCTCGTGTTTATCTGTTTATCCTGGGGCTCTTTATACCCTGGGTCTTCCCCTGTGTCACCTTGGGATGTCACCTGCGCTCCAGTGCAAGAACTCGGCACAAATGGTGGAGACACCGAGGGTGCCATTTTCCCATCTGCATTTGAGGGCTTGGCAGGGAGAGCACTGAGCGCTGGGAGACCCAGGTGGGGAGATGAGGCCTGTGCTGAGGCAGAGGCAGGGGTGGGGAGGGAAGAGGCAGGTGCACCCATAATGCCCCTCCGTGTGACACTGATCTGACAGTGCTCTGTGTGCACAGACTAAAAAGACAACAAGAGACCTACTGACTGATCTGTCCACACTAGGATGAACCACATCAAATGGCCAAGTCTGTGGGTCAAAGTTGGTTGAGTTTCTGCAGCTTCCCAAGCAGGAGACTGCATGAGCCAGGCTTGGCAGGACTTGCAGCCAGCGAGGGCCCCCCTGACCCTGAGTTGGGCGTGTTCTGCAGTCCATACCATCCACTTCCCTGCAGTCTCACATCCTGTCATCTATTTTGAGAGAGCAGGTTTACCCCAGAACAGTCTGTGGAAGGTGTGGGGCAGGGAGGAGAGCTGGGCCGCCCTGAGGACACAGAGGGAGAAGGGTGCTGGGAGCCAGCCTGCAAGTTCTGGGGAGCCTCAGGGTGCCTTTGAGGGCACAACTTGGGAGGCCAAGCTCAGCGGGTGAGTTAGGGTTTGGTGGACATCCTTTGACATGTCAAAGGGTGTCACAGATATCCCTGGAGCCTGAGAGGTCTGGTCGGCCCACCACTGTGGCTGGAAACAGACTACAGTGGGGAGGAAGGAAGAGTGACTTGCACCCTGAGACACAGTGGCCGGACCTCTAGGAGCTGGCTGTGACAGCCCGGAGGGTGTTGATGCCTTTCCCACCTCCTGGAACACCCCCGTGTTAATGGGGGCGTGGGTCTACCTGGGAGGGAGTGGCAGGGCTGCTGGCCCAGCAGACCGGGGGAAGACTCTTGGTTTGGAATTTGACTGGGGCATAGGTGACCAGGTGAGACAGCAGGAGGCGGGGTCTGTCTGGAGAGAGATGACGTCTTTGGCTGGGTCCTCCAGAAGCCAAACTTGAGATGGGGATATGTAGGCATGGGATTTATGAAGTGCCCCTGGGAGAACCACTCAGGGAGGAGGGAGGGCAAGGCCAGGAATGGGCAGGAGACGGACCAGAGGTTCCTTCTCAGACAAAACCCGCTGACCGCGCCGGGGGCTCTAGGATACGAGTCACATCTTGGAGGGCCCCGACCTGAGACGGGACTGGCTTTCATTCTCGCCCCCTCAGCTGTTGAATAAGGGCCACCGCAGGGGAGGGGGCTCCATTCCTCAGGACTTCTGGCTCTCCAGGGGTACAGCTGAGCTGCTCCAGGAGCCTAGGCCAGGCCTCAAGGGGTTCTGCCTAGGATGTGGTCACATGAGAGGTGCCCCTCGGGACATCCAGGGCTTGTCTGGGAGAAGGAGCAGCAGCCAGAAACAGGGGCCCCATCACATGTGTGATCTAGTCCCTTCCATGCACACCATGTGGGAGCCCTGGCACACAGGAGGTGCTGCAGAAATGCTTGTGGGGTGAGCGCAGGTCTCTCCTTCTGGGGAGGAGGAGGGCTTTTCCCCTGGCATCAGGAAGCATCCCGGTGGCTGGGTCACACAGGTTCTATGCACATAACCTCAGACCCTGCCCCAGAAGCACTTGTCTGATGGGGGAGGCCAGAGGCTAAAATATTGGGGGAGATGCCCAGATGGCCTTGAGCTCAGGACTGGGCACACAGTGGGTGCTTAACCAGGGGCCTGTGGCTGCTGTGACTACCTATGACCAGCATCTCTGACTCTCCCAGGGCAGCCCAAGCCCTGGAGGCTGAGGGGGGCTGTTCCTTTGCACAGAGGTCTAAGTAGGACGGCAAACAGGACCTCTTGGCCCTGGCCTTCCCTGTGTCACACGTGTGGTGCGCCAGGGCCCAGCCAGGACAAGGACGTAGGTTCCTTCCCACAGCAGCTGTCTGCAGCCTGACCCAGGCCTTTCTCTTCTGAGCACCCAGGCTGCCAGCATGGGTATAGGTGGGGGTGACAATGGGGGATAGGGGTACAGAACTGCTCCCCAAGAAGCAGGGGCAGTGCTGTGGAAAGAACAAGTCTTTGGACTCCAGCAAATGTGGGGTTGAATCCGGTGTCTTCCTTCCTGGCCTTGGGGGCTGCTGATGGACGTTTCCCTGCCTGGAGCCTCTTCCAGTGGGGATAATCCTAGTGACTTAGGACAGTCTAACAGAAGGAGACTGTGTCACCCGGGGGTGTCAAGTTGTAGCCCTGCCACTTCGGAGCTGGGTGACCGTGGGCAAATTACTGAACGGCTTTGCACCTCAGCTCACGCATCTGTAAAATGGGGTGAGCGAAAGTCCCTCCTCCTTCTGAGGGTCTCAAAGAGAAAGTGAACAGGCCGCTGTTTTCTGTTGCAG
Seq C2 exon
TTCGTGCCCTCGTGAGGCTGGCATGCAGGATGGCAGGACAGCCCGGCCACATGCCCCATGGAGGGAGTTCCAACAACCTCTGCCACACCCTGGGGCCTGTGCATCCTCCTGACCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119408:ENST00000422297:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.810
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0006920=Pkinase=PU(0.6=3.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development