HsaINT0112674 @ hg19
Intron Retention
Gene
ENSG00000165802 | NELF
Description
nasal embryonic LHRH factor [Source:HGNC Symbol;Acc:29843]
Coordinates
chr9:140348843-140349759:-
Coord C1 exon
chr9:140349691-140349759
Coord A exon
chr9:140348896-140349690
Coord C2 exon
chr9:140348843-140348895
Length
795 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
CCCCTGGCTTCCTCCCCCAGGAA
3' ss Score
11.25
Exon sequences
Seq C1 exon
GGTGTTCAGGGGCTACGCGGAGAGGAAGCGCCGGAAACGGGAGAATGATTCCGCGTCTGTAATCCAGAG
Seq A exon
GTAGGGCCTGCCAGCCACTCGCCACCAGGGTCCATCTCTGGTCTGTGCTGGCCTGGCCTGGGCCCCCTCGGCCCTGGCAGACCTGATGGGGGAAGGGTGGTGGCGACCACTGGCCTGGCCCTGCTCTGGGGACGTGGCAGGCAGGAGAGGCCATGTGGCCCGGGCTGCAGGAAAGCATCTCACCCTCAGTCCTGCACTCCGAGGGCACGTGTCTCTGTCTGGGCTGGGGCCAGCAGCAAGGCCCCCCTCCCCCACTCCAATCACACAGATGTGTCTGGGAAGCTTTTTTGCCCGTTTTGGATGTTGGGCCTTGGCAGGGTCCAAAGTTTGGTGGAGGAGAGGACCTGCCCCTGAGGTGGCTCAAGGACACAGAGCAGGAGAGGGGGCTCCTGCAGGCCCCCAGCCCGCCATGGGGTGGTGCAGACAGGAGCCCCGCTCTGCTGCAGCGCAGGCAGGCTGGATCCTCTGCCACATGGGCGTGGAGGCTCAGGGCGTAAGTCCCGGGCGAGGACGGAAGGTCAGAGCCTGGGAATGCAGCTCGGGAGGAGACTTGATCCAGAGCGCCAGGCACTGCACCTTTGTTCTGGAGTTGAAGGGGAGCCCTGGAAGGCTGTCGCGGGAAGAGCACTGGGTGGGATTTGCCTTTGGGTGGGAGGTGGTGCCAGGAGCCAGGGAGAGCACTGGCTTCCCACACCGAAGGGGTGAGAGTAGAGCCATGACCCGACGGGGGCTAGGTGGGCAGGGGCTGCCGTCACCCTCTCACGGCCCTCTTCAGCCCCTGGCTTCCTCCCCCAG
Seq C2 exon
GAACTTCCGCAAACACCTGCGCATGGTCGGCAGCCGGAGGGTGAAGGCCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165802-NELF:NM_001178064:6
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.567 A=NA C2=0.131
Domain overlap (PFAM):
C1:
PF0061222=IQ=PD(52.6=41.7)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)