MmuINT0107694 @ mm9
Intron Retention
Gene
ENSMUSG00000006476 | Nelf
Description
nasal embryonic LHRH factor [Source:MGI Symbol;Acc:MGI:1861755]
Coordinates
chr2:24913773-24914593:+
Coord C1 exon
chr2:24913773-24913841
Coord A exon
chr2:24913842-24914540
Coord C2 exon
chr2:24914541-24914593
Length
699 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
CCCCATGCTTTCTCCTTCAGGAA
3' ss Score
11.51
Exon sequences
Seq C1 exon
GGTATTCAGGGGCTACGCGGAGAGGAAGCGTCGGAAACGGGAGAATGATTCCGCGTCTGTAATCCAGAG
Seq A exon
GTAGGGCCTGCCAGCCACTCGCCACCAGGGTCTATCTCTAGTCTGCACTGGCCTGGCCAGGGCCCTCCTGGCCCTGGAAGACCTGATGGGGGAAGGGTGGTGGCGACCACTGGTCTGGCCCTGCTCTGGGGACGTGGCAGACAGGAGGCCATGTGGCCAGGCTGCATTTCAGCCCCTGGACCTATACTTTGAGGGTACATTGATAATCATACTGAAGCTAGCTGGCCCATCCAAGTCTGTGTAGCCCTGAAGCCCAGAGCTGTTCATCCAGTGGCACCGCCTACCCTCTCCAACTCCCGCCCACCTCAGAGGTGTGTCTGGGAAGCTGGACGTGGGTCTTGGCAGGGCACAAAATTTAGGAGGAAAAAAAAAAAAAAAAGAACCTGTCTCCCTCGTGGGGAAGGGACATTTTGAAAGCCCCAGAGCAGCTTGTGGGCGTGGGTTCAGGTAGAGGATGTAAGGATGTCTGCAACAGAGGAAATGCCTGCAAGGAGCTTGAGCAGACAACAAAGCTAGGAGGAGAGAGACACCGTGCCTCTGCTCTGAGGTCCTGAACGGGGCTCAGGAGTAGACAGGCCTTGTCTATGAGCCTTGGGGAGATGGTTCAGTGTCCACCCTCAGCGTGGTCAGGGACTAGGTTGGCAGGAGCCAGCATCCACCCTGCTGGGTACCCTCATCACCCCATGCTTTCTCCTTCAG
Seq C2 exon
GAACTTCCGCAAACACCTGCGCATGGTTGGCAGTCGGCGGGTGAAGGCCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006476-Nelf:NM_001177654:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.646 A=NA C2=0.138
Domain overlap (PFAM):
C1:
PF0061222=IQ=PD(52.6=41.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: