HsaINT0113502 @ hg38
Intron Retention
Gene
ENSG00000087303 | NID2
Description
nidogen 2 [Source:HGNC Symbol;Acc:HGNC:13389]
Coordinates
chr14:52004803-52005849:-
Coord C1 exon
chr14:52005737-52005849
Coord A exon
chr14:52005497-52005736
Coord C2 exon
chr14:52004803-52005496
Length
240 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
CCCCTGCTCTTCTCTCACAGGAA
3' ss Score
12.43
Exon sequences
Seq C1 exon
GGATGGTGTTGTATCAGTAAATAAACATAGTGGCCAGTTTACTGATGAGTATCTCCCAGAACAACGATCTCACCTCTACGGGATAACTGCAGTCTACCCCTACTGCCCAACAG
Seq A exon
GTAAAAAGTATGCTTTAGGATGCTCCTTTAAATTAGCAGGGTAGAGAAGGGATATATATGGTATTTGATTACCCCTGCTGCCTGTGACACTGCCACCATTGCCTTCTTCCTGCCCTGAGGGCCAGTCTTTACTACCTTAAATCTACCTAGTTTATACACAAAATGCAAAGACTTGCTGTTGCAACTTGGTTACAATATACTCACCCACCACCCTGTCCCACCCCTGCTCTTCTCTCACAG
Seq C2 exon
GAAGAAAGTAAGTACAGTAATGTAAAGGAAGACTTGGAGTTTACAATCAGAACCTGGACCCTAAAGAACAGTGACTGCAAAGGCAAAGAAAGTAAAAAAGGAATTGGCCATTAGACGTTCCTGAGCATCCAAGATGAACATTTTGTAGTGCAAAAAGACTTTTGTGAAAAGCTGATACCTCAATCTTTACTACTGTATTTTTAAAAATGAAGGTTGTTATTGCAAGTTTAAAAAGGTAACAGAATTTTAACTGTTGCTTATTAAAGCAACTTCTTGTAAACATTTATCATTAATATTTAAAAGATCAAATTCATTCAACTAAGAATTAGAGTTTAAGACTCTAAACCTGATTTTTGCCATGGATTCCTTCTGGCCAAGAAATTAAAGCACATGTGATCAATATAACAATATAATCCTAAACCTTGACAGTTGGAGAAGCCAATGCAGAACTGATGGGAAAGGACCAATTATTTATAGTTTCCCAACAAAAGTTCTAAGATTTTTTACCTCTGCATCAGTGCATTTCTATTTATATCAAAAGGTGCTAAAATGATTCAATTTGCATTTTCTGATCCTGTAGTGCCTCTATAGAAGTACCCACAGAAAGTAAAGTATCACATTTATAAATACCAAAGATGTAACAATTTTAAAATTTTCTAGATTACTCCAATAAAGTGTTTTAAGTTTTCCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000087303:ENST00000216286:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAGAACAACGATCTCACCT
R:
ACCTTTTTAAACTTGCAATAACAACC
Band lengths:
297-537
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development