RnoINT0101077 @ rn6
Intron Retention
Gene
ENSRNOG00000000341 | Nid2
Description
nidogen 2 [Source:RGD Symbol;Acc:1311685]
Coordinates
chr15:4894213-4894785:-
Coord C1 exon
chr15:4894675-4894785
Coord A exon
chr15:4894550-4894674
Coord C2 exon
chr15:4894213-4894549
Length
125 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TGCTGTCCATTCTCCCACAGGAA
3' ss Score
11.68
Exon sequences
Seq C1 exon
GGATGGTGTTATATCAGTGAGTAAAGACAGTGGCCAGCTTACTGATGAGTATCTTCCTGAACAGCTCTCACCTCTATGGCATCACTGCAGTCTATCCCTACTGTCCAACAG
Seq A exon
GTGGGTCCGTCGAAGGGCATCACCGGGCTTCCTTCCTTGGACCAGCGGGTAGAGGGGGGCTGTGGTAACTCTCACACTGCCTTCCTTAACCAGTGAAACACTCACTGCTGTCCATTCTCCCACAG
Seq C2 exon
GAAGAAAGTGAACATTAAATGTACAGGAGGATTTCAAGTTTACAAGAACCTAAGAACATTGCTACGAAGGCAAAGAGTGAAGGAGGAATTGGCCATTATGAGCTCTTGGCACACAAAACGAGCATTTTCAGTGGAGTGAGACTCAAGTCTATCTTGTGAAATGTATACCTCAATCCTGACTACTGTATTTTTAAAAACAAAGGTTATCACAAGTTTCAGATAGAATGTTATATAAACAATCAGCTAGAGCAGACACCAAGTCTGACTTTTGTTTGCCACGGATTCTACCTGGCCAAGAAAAGTGAAGCAAACGAATGTTATGAAAACTTATTCCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000341:ENSRNOT00000000383:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTAAAGACAGTGGCCAGC
R:
GACTTGAGTCTCACTCCACTGA
Band lengths:
243-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]