HsaINT0114790 @ hg19
Intron Retention
Gene
ENSG00000163072 | NOSTRIN
Description
nitric oxide synthase trafficker [Source:HGNC Symbol;Acc:20203]
Coordinates
chr2:169707346-169707692:+
Coord C1 exon
chr2:169707346-169707516
Coord A exon
chr2:169707517-169707593
Coord C2 exon
chr2:169707594-169707692
Length
77 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
CCAATTTTCATTCTTTTCAGAGC
3' ss Score
9.45
Exon sequences
Seq C1 exon
GTAACCCACAGCATCTGCCTATATGCCTTTTGGGTCAAAAGAGCCTGGGGAAAGTGTGTGAGTGATTTAAGATACCAAGACACATTCCTTCCTGGAAATCTCCCTCCACTATGGTTTGGATATGACATAGTCAAGAGGCTAATCATGAGACTTTGTTCAGTCTGTCTTCAG
Seq A exon
GTGTGTCAGTGTTTGATGAGTGACTTCCATTTTGCATAACAACTGGCTGATCTTACCCCAATTTTCATTCTTTTCAG
Seq C2 exon
AGCATTCTGGAGCTGGAGAAGGAAAGAATTCAACTTTTATGCAATAACTTAAACCAGTACAGCCAACATATTTCTCTTTTTGGCCAAACCCTGACCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163072-NOSTRIN:NM_001171631:13
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF087426=C8=PD(55.4=93.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGGTCAAAAGAGCCTGGG
R:
TCTTTCCTTCTCCAGCTCCAGA
Band lengths:
170-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)