HsaINT0115015 @ hg38
Intron Retention
Gene
ENSG00000188747 | NOXA1
Description
NADPH oxidase activator 1 [Source:HGNC Symbol;Acc:HGNC:10668]
Coordinates
chr9:137433029-137433263:+
Coord C1 exon
chr9:137433029-137433074
Coord A exon
chr9:137433075-137433204
Coord C2 exon
chr9:137433205-137433263
Length
130 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
AGTCTTGCTCTGTCCTACAGGGC
3' ss Score
8.96
Exon sequences
Seq C1 exon
AGGCCCCAGGTGGAGCAAGTTGGCAAACAGGCTCCTCTCTCCCCAG
Seq A exon
GTATGGGCGTCCTCAGCGGCGGGGTCCCCGGGTGAAGGAGGAAGCTGCTGGTGCATGGGTGCCGGCTGCCCTCCACCCACAGGGCCCACTTTGGTGGTAGTGGCTGTGTCAGTCTTGCTCTGTCCTACAG
Seq C2 exon
GGCTGCCGGCAATGGGGGGGCCTGGCCCCGGCCCCTGTGAGGACCCCGCGGGTGCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188747:ENST00000341349:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development