MmuINT1024464 @ mm10
Intron Retention
Gene
ENSMUSG00000036805 | Noxa1
Description
NADPH oxidase activator 1 [Source:MGI Symbol;Acc:MGI:2449980]
Coordinates
chr2:25086939-25087199:-
Coord C1 exon
chr2:25087130-25087199
Coord A exon
chr2:25087028-25087129
Coord C2 exon
chr2:25086939-25087027
Length
102 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGA
5' ss Score
7.22
3' ss Seq
AGTGTCTCCTTTATGAAAAGGTG
3' ss Score
5.06
Exon sequences
Seq C1 exon
AGGTCCCAGGCGGAGCATGCTGGCCACCAGCCATCCTCATCTATGTGTAAGAGGGTCCTGAGCACTACGG
Seq A exon
GTAGGAGGAGCCTCTTCAGGAGAGCTGGGGCGTGGGCACTTGTCCCTTAAGGAAAGTTTGGGGTAGGGGCCAGCTACTTCAAAGTGTCTCCTTTATGAAAAG
Seq C2 exon
GTGGTCACACGAGCCCTGGCCTATATGATAGTTTGCTGGCATCCAGAAGGCCTGGTCCAGGCCCCTCTGAAGTTTCCTCAGGATCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036805:ENSMUST00000044018:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.966 A=NA C2=0.883
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCATGCTGGCCACCA
R:
CAGATCCTGAGGAAACTTCAGAGG
Band lengths:
146-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types