HsaINT0115664 @ hg38
Intron Retention
Gene
ENSG00000119508 | NR4A3
Description
nuclear receptor subfamily 4 group A member 3 [Source:HGNC Symbol;Acc:HGNC:7982]
Coordinates
chr9:99832689-99833454:+
Coord C1 exon
chr9:99832689-99832818
Coord A exon
chr9:99832819-99833281
Coord C2 exon
chr9:99833282-99833454
Length
463 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
TTTGTCTCTTTTGGCATCAGTTG
3' ss Score
5.87
Exon sequences
Seq C1 exon
AGAACAGTGCAGAAAAATGCAAAATATGTTTGCCTGGCAAATAAAAACTGCCCAGTAGACAAGAGACGTCGAAACCGATGTCAGTACTGTCGATTTCAGAAGTGTCTCAGTGTTGGAATGGTAAAAGAAG
Seq A exon
GTATGGATATAATGCTTTTTACCCAGTTTGCTTATACATATTATCAGAAATCAGTGAAAAAAAGCTAATATTTACATTGGGATGGTGAATTTTTCTAGTTCCTTTTTCCTTTCAACATTTTATTTTTATCATATATATCTACATTTTAAAATAACTGAGGACTATTTATTCTAATTTCTCAAAATTAACAGAGGACTTGTATACATACATCTTTGTTCTATTTAAGAAGGAGACTTTTAGGGCTAATTCATTACCAAATGTAAATATCGGTGGCTTTTATGCTGCTTGTTTCAACTCTCATGAAATCATTGTGTGAATATTATTCCAAACTTATTACCACTTTTAAATGGTTGGTCTCATTAATGATTGCTCAACTGTAATGTGTTTTTATTCCTTTTTGCGATTTATGGTCGTTCATTCCATAATCTTTGAAGATTGTTTTCTTTGTCTCTTTTGGCATCAG
Seq C2 exon
TTGTCCGTACAGATAGTCTGAAAGGGAGGAGAGGTCGTCTGCCTTCCAAACCAAAGAGCCCATTACAACAGGAACCTTCTCAGCCCTCTCCACCTTCTCCTCCAATCTGCATGATGAATGCCCTTGTCCGAGCTTTAACAGACTCAACACCCAGAGATCTTGATTATTCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119508:ENST00000395097:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.515
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PD(58.6=93.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTGGCAAATAAAAACTGC
R:
TGGAATAATCAAGATCTCTGGGTGT
Band lengths:
271-734
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development