HsaINT0115679 @ hg19
Intron Retention
Gene
ENSG00000116833 | NR5A2
Description
nuclear receptor subfamily 5, group A, member 2 [Source:HGNC Symbol;Acc:7984]
Coordinates
chr1:199996770-200008923:+
Coord C1 exon
chr1:199996770-199997039
Coord A exon
chr1:199997040-200008785
Coord C2 exon
chr1:200008786-200008923
Length
11746 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TCTGTGCTGCCCGTGTCCAGGTG
3' ss Score
10.19
Exon sequences
Seq C1 exon
AAAAAGTACAGAGTCCAGGGAAAGACTTGCTTGTAACTTTATGAATTCTGGATTTTTTTTTTTCCTTTGCTTTTTCTTAACTTTCACTAAGGGTTACTGTAGTCTGATGTGTCCTTCCCAAGGCCACGAAATTTGACAAGCTGCACTTTTCTTTTGCTCAATGATTTCTGCTTTAAGCCAAAGAACTGCCTATAATTTCACTAAGAATGTCTTCTAATTCAGATACTGGGGATTTACAAGAGTCTTTAAAGCACGGACTTACACCTATTG
Seq A exon
GTAAGTAGGAGTTTCTCTATTGATCATCTATTTATTCTGCTACTACATACATATAATTTAATCTTGTTGATGGATTTTGCATTTTAAGTCATGGCTTTTCCTATTATGTTTATTAAAAGCACACAATAAGCCTATGTATATATATCACACATTTATCTTTCTTGCAGTTCAAAAAAAGCAAATGGATATTTCAACATATGAATATTATTCATTATATCTAGTGTTTACTGGTGTCATTCTAATACCCTAATCAGCCAGAAAATATAATTTATACTTTATCAATTTCAACTTTAATATTTTCTGATAATTTTTAATCAGAAATAATAAGCTAAAATTTGAACAATTTGAAACAAGTTAATCATATTGAGTGATCATTGATCAAACTTTAACAGATAGCTGTCAAGTATTTGTTACTTTTCAACCCACACAAAAGTATGGTGTCTTATTCTCTGCTTATACCGTAAAAAATTTTCATTTTATTTTCCTGGGGAATGAAAGTCATGCCCCCACCTCCAAAAAAAAAAAAAAAAAACCAAAAAAACTAGACCATCATTAGTAAAGGATTTGAAGAGCTACTGTTTCTCGCAACAATTAGTATATTTTGTTTTTACAAACAGAAATAAGTAAATAAAGCTACTATTCATTTAAAAAATAGAGTTACAAACTTATGAATTTTATAGCAAGACTACATTCAATTAATTCTAAAAGTAAAGGACTGAAGGGAAGTGATTCCCAGTGATCTGTAATTATTTGTCTGTTGGAAGTCAGGCCCTTCTGCCTTTCCCCAGTTTTTGAAGGACCTGTGCCTTTTCTGGCAGCATTTGCCTAGGCTTTCAGACTGGAATTTCCCTCCGAATTTGCAGGGGCCTGTCATGAGCTCTCTGAGTCTCAGCTCCATTATAACAAGAAAGAAAATCAAGGCTTGAGTTTTTCCTCTTTTTTCCTTCCTAGTCAGCTGACTCCACAGAATGCAGTGGAGTCACAGATTGCTTTTTTTATGGGCCAACTACACCCTAAAGTATATCACTTGAGGAAATGTTTACCAAAAATGTTCTATACTTACGAAAAAGAAAACATGGGGAAGGTAAGCAGGGTGTAACACACAATCAATTGTTCTGCAGATAACACAGAAAATACAGGCACAAGAAAGATGAGAGAGCAGCACACAACCATTTCGCATCTTTTTCGTCGGGCAGAACCGCCGCGGTGCGCAGGCAAGGAGTCCTTCCCGGCAGCTCCGCGCAGCTCCGGTTCCGCGTCCGGGGCCGCAGCTAGAGCGCGCTCGGGCCGGAGACGCGGACTGCGCGCGCACGGGGGACGCGCGCTCGGGGGCTCGCGCCCGCGCGGGCGGTCTTGGGCTCCTGCTGCGCGCAGCCCCAGCTGGCCGCTGCCAAAATAGAGTTGAGCTGGGTCGGGAGACCACGCACGCCGATCCCTCACAGTCTCCCCCACACCCCATGGGTGAATTAAAGAGGGTAAGGTAGGGGAAAGAGACGCTGTTGCACTTTTCTCTGCAACCCTGGAAGAACTGTGTTTCCAGCTACCGCACGCGCAACTCACATCGCAAGGGACCGAGGCGGTACACTCTGAGCGTAAACAGAGAACACCTGCAGCTCTGGAATCGGTCCCACCGCAGAGGGCTGGGAACCGGAGGACTGTCGGTCCAGCCCATAAGGGGCTGCTGGGGACTAAACCTCAAGAAAAGTACCGAAGAAGGCTCTCCCCTGGCCTCAGCGAGACTACCCCAACATCCTAAACCTGTGCAGGCACTTCCGGGCGCCGGATTCCGGGATAACAAAATTCCAGTCAATTTGCCGGTAAAAGAGACCTCTTTCAGGATCTTGTTCGCAGCCACCCGCCCCTTCCCAACCCAAGCACATCCCCTCCGCCTCCTGGTATTGCAGCCCCGCAGGTGGTTGTGAGGTGTCCGCACCTGCAACATCTTAGTGACCCTGAGGCGGCTGTGGCACCGGGAGACAATCTGTTTACCTCGTAGCCTCCACGAGGGTGCTAACGGTCGTTCCCAGGGTGAATGGCTGGACGGAGCCATCCAAAGGGCTGAGGGAGAGGAACAGAGGGCGGTGAGGAGCCTTCGGACTGAACTATTGGATTGAAGGGCCTGACCCGATTCCTGAGGGAGAGATGCCCCTTGAATGGGTCTTTCTGATTGCCCAGGGTAGCCCCACTGGGAAGAACCCACGGGTGCAGCTGTAGAGAGTGTCTGAGGGTCTCGAGGGTAGCTTTCAGATGGCAAATTGCAAGTTGGGCTGTGTTGAGTGGTTCACAAAACCGAGCCCGGTGTATGTAGACATCAGTCAGGGTTTACAATTCTATATTTAATTCAGTTGTGTTGTACTAGGAAATGAGCCTCCTTTTGTTTAAAAAGCTGTCTCCATGGTTTTTAACTAGGGGCTACATCTTGTATGCACACTGATGGTTACATGAAAGTTTTGTATAGATGTCTGTGCTTGTATAGAAAAGCAGAATTAAGATAAAGTTGTTCCTTCTGCCTACCTGCAAGATAATCATTCATTGTAGTGTAAAAGCAGCACACTCAGGTTATAACTAGATTGTTCCCTTAAAGTTAACTAACTCTGGGACACTGGCCAGACTCTTGGTTTCTGGTCTTGGTTTACTTCTTTCTCCCAAGTGGGATGATTCTATTGAATAATATGCAGTACTAACTTTAGAAGCTTTTTATACTTACCTATATCAAGAAAAGAGCCATATCTGTGTGGTAGGAAATGTTATACATAAAACAAATATTTATTGACCACTCCCACAGTGCCCAATATTATGCTTTGATTCATATTAAATTTCCATAATTCTTCAAATTAACTGCATTTGCAGAATATTTTATGCACTCAGTATAATATTGCATATTATCCACAGAAGGTTATGTCTGCATACTTAGGGGTACATGATACACAGTGCAAACACTGTATTGAGTCTGTAATGTGAGTCTTGCTATCTGGTCCCCTGAACACTCTGAGTCTGATTTTATTTCAGTGATAACCTCCAGCAAGCTCTGTGCTCATAAGGATCTCTGAAAGTAGACGTTTCATCAGCGGAAAGTGTGATAGCCATTATGTCACCCTAACCTCCAGCGAGCTTTATTTAGAATGCCAGCCACACAAGCCCATGTTCTGATTCTCATAGTTGGGGCTTAGGCTGCCAGTTTCTTCTATGAAGCTAAACTCTAGAGCCTCCCTTCTTTCCATGCCCGAGTCCATCTCCAAAACAGTGCTTCTCAGATTCCTCTTTTCTGGCCTGGATCCACAGGTAGTGACCAGAGTTAACAGAGTTCTTGGGCCAGGCACAGTGTCTCAAACTGGTAATCCCAATACTTTGGGAGACTGAGGATGGAGGATCACTTGGGCCCAGGAGATCCAGACCAGCCTAGGCAACATAGTGAGACCCAGTCTCTACAAAAAATAAAAAAATAAATAATTAGCTGGGTGTGGGTGTGGTGGCATGTGCCTGTAGTCCTAGTGACTAGGGCTTGGGGGTTGAGGTAGGAAGATCACTTGAGCCAGGGAGGTTGAGGATGCTGTGATTGTGCCATTGAACTCCAGCCTGGGCAACAAAGTGAGACCCTATCTCAAAAAAACAAAACAAAACAAAACAAAACAAAAAAAGGATTTCTTTTTCTTTAACACCTTTTTTTTTTTTTTTTTTTTTTTTGAGGCAGAGTTTCACTCTTGTTGCCCAAGCTGGAGTGCAATGGCATGATCTTGGCTCACTGCAGCCTCAGCCTTCTGGGTTCAAGAGATTCTCCTGCTTCAGCCTCCCAGGCAGCTGGGATTACAGGTGCACGCCACCACGCCTGGCTAATTTTTTGTATTTTTAGTAGAAATGGGGTTTCACCATGTTAGCCAGGCTGGTCCCGAAATCCTGACCTCAGGTGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTACAAATGTGAGCCACCACACCTGGCATCTTTAACACCTCTTCTAACAAACCAAGAGAGATTTATAGAGGAAGGGAGAACAGAGGCTTGTTAATGCTTCTCTCCTTTACTTGACCCCTCTACCAGACACAATGTCTAGGATTATCTTGGATTCAGCCTTGAGCATAAGTTGAGCTAGAGAAGGGCACATTGTCAGACTTCCACCTACAGGCCCAACCCAATCCCCACCCCCAGGGATGCACTAGGCAGGCAAGACAACTTCACTCCGCAGCTCTAGAGTCTACCTTAGGATAGAACTAGTTCTTTGAGTTGCACTTCCTCACGCTTCACCTTATTGGAACAGACTTCTTGGAAAAATCCAGTTGGCTTCAAGGAACTTCAGGAGGGCATTGTGCTCTGGGGAGGCCCTGGGGAAGTGTTGAAATGTGACCAATATGATCTTGAGAGATCAAGCTTGAGAAAACCATGTGAACTGGAACTGACCAGGCAAGCTGATAAAGGTTGTCTCTTCTTTAGTCTTTTGGGAAGCTGTTATGTATGTTTTTGTGTGGTTGATAAGTAAGAAAAGATATTTGGAGTGTAACTTTTAAACACCAAATAACCTGAATGCAGATGACCATGAGCACTTATATGAGCAGTTTTATCTGGTGATAATGTAATTGTCCCCAAGGACTTTGTCAAGCCCTGCAAGACAATCAAGTTAGCAAGCACATCCCACTGGAAGGTGATCCTAGAATGGTTAGTGATTCCCTTTTTACTTTCCTTACAGAATGATGAGTTTGAGTGAAGCTAAGGGGAAAGACAAAGGGGAACTGATATATATATATATATCCAGCGTAATATATTTCTTTCCTGGCACTGTCTCATTTAACTATAAAGTTTACTTTGTTAACCCAATTTTACTGATTAAAAAATGGAATCAGAGGTCAAGCAATTTACTCAGCTTGTCAAGAGAATGAACTGTAAATAGAACCCAAGAAATATTCTGAAATACATACTCTTTCTCCAAAGTGGTAACCACTTGTTCTTGTTGATATAAAGGAATTATGATTTAATACAATGTTGGTCTATGCAGACTTTCCTCCAATGGACATTTCGAGCTTAAGAAACATATTTGTAAGTGGCTTTTTAATCTTCATTTCCATTCCACGGTAGAAACCATATTTGGATCCTTCTAGAATTCAGAAGGGTGGCACAGGGAGTGGTGTATGGAAAGCAGAGTGGAAATCACATCTGGGAGGACTGAGGTCTGAGTGGGGTGGGACAAAGGCACTTCTGGTCCCCTACTCTGGAGTTTCCTGGAAAGGATCTCTGGAGTTTGGATGAAGTTTAGCTTGTGAATTTGTGGTGTATGGTAACAACTCGCAGGGTTACCAACAGATGGTGAGAAGGAACTGAGAGGAAATTCAGAGCATGTACTTGTTATAGAGTCAGTGAGTATGAGGAGGGCAGGGAAATCACTCAAACTGAGTGACTGAATTAGATAGCATAAACAAACATACTGTTGTACCATGAGAGGAGGGGATAGGGAAAGACAATTTAGGTGTCAATTAAAAAAAAAAGCACTTTTGACAAACCCAGCTGTGCCTCTTGCAGTGAGATATGCTAGTCCCACACCCATGCTAGCATTTTTCACGGTAAGTGCTGGATTCCTTGCTCAGGGTTTGGATGCCTGCAGCCTCTGCTTCCCGGCCTTCTGCAAGCTCCACCTGCTCCAGCGGCCTCTACAGGAATGGAAAGAAAATTGGTCGGAATCCACTGCTGGGTCCTGGAATCAACTTCCCAGTTTCCAGACAAGAAACTCTGGAGAAAACAAGTGAATCTCTCTCAAGCCTTGGCACACACTGTACACCATCTCGTAATCGCGAAAGTTATCACCATGTTGGAAAAGCCCACGCCCTTCTAATTGTGCAACCTCTGTAACTGCCCAGACCATAACACTTTCCCTAGTTCCACGCCCCATGCTTGAGTGTGACGGTACCACTGTTAAGTCTTGCCTTTCCAAGCTCCCACTTTCTTTGCTGACCAAGTGAGACCCAAATTGCTGGACTCCGCACCTCTGCGGTCCCGGCACTCTTTGACCTTAAGAATCAGAAGCTCAGGCAGGGGCTTTTCTGAAGGAAGAAGTTTGGTTGGATCCATCCCCTCGCTGCAAAAGCCGAGGAATTCTGAAGCAATGCAGGATGTTTCCCCTTCCATCAAGAAGTTTCCAGTATCGCCGGATACATTTAAATGGCAGCCTAGAATAATCTCGTGCTAAGGATTTTGTTCCTGACCCAGGTTGAAGCGGAGGAGAGGGTGTAAAGGATGCAACTGCAAGTGTTCAGCTAGTTTCACAAGGTGCTTTGTGGCCTACTAGCGCCGGGATCGTCGTTCTGTTGGCCCCGAGGCTGGACAGAATTGATTCCAATGGATGGAGTCCCAATAGTTTTGAACTGGAACTGGCTCAAATTTCCATTTCAATTACAGAGAGGAAGAGATAGATTAGACCACCTACCCGAGATTATTTCCCCTGCCCCACTCCTTTCTTAAGACCGGATCTCCCTGTTACATTCTTCTAAGGGCACCGACTATACCCTGGCGGGGCACTCCAGGACCCCTGGGTTGGGACAACGTGCTGTAAAGAAAATAAGTGAAAAGGTTCTTCAGTGAACTCTTTTTATACAAAGAGCCGTAGATTCCGATATCCAGGCCAAACTCTCCAAAAAGCCCTCCTTTCCTCTGGGGCAAGGGTGGGAGGTTGCCCGGGGGGGTGGGTGGGGGGTAGGTTGGATTACCCAGATAATTGCTTCGGCTTTCGTTTTCCTCCGCGATAAAAACCGCGCCACGCCAGATCGAGATACTCTCATAGTGATTGTGAATCAATCGCCATCCTGCTCTAGGGGCTGATGTTGATGTCTTAAGTAGTTATTCACACGTGCAGCAGAAAGGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACAAGGCACGACTGCTCACCTATTCAGGTTTGCTTTTTTAAAGCTTCGATCAACACGACGCTCCCTGGTAATTCCTATGGCTGTACTGAAATTTAACCCGTCTGTTTCTAATACAAAGCGCTCGGGATGAGGGCGGGTGGAGCCTACGGGCGTGGGCGGGTAGCCCAGCCCTCTGAGCCAGGGAATGAAACTGGAGTTCTGGCTAAACTTTTCAGAGAAAGGCAAAAGCAGCTTCTGATGGGTTTTTCGGCTGGGAGGGGCGGAAAAATTAGGCAGACCCGGAGCTCCCGTAGGCTGAAAAACTTGCTCCTCTTCCCCCTCGGGCTATCCTGGCCTAGTAATGGAGATCTGAAAAAAATCTAGACTTCTTTCGGGGTCTAAAAGGTAGATATGTGGGACGAAAAAAGTAATTGTCCTGGTTTCTTAAAAAGCACCAAAAAGTGGGAATGGAAGAGAAGACGGGAGAAATTGTTTCGAAGGAGGAAGGTATTGCAAGTTTTGTGCAAGTTTGGGTGGGTCATCTACCCAGGCGCGCGGGGAAAGATGTGTCTGCCACACCTTTTGCGAGCCCAGGAAACTTGAACCGCTCCTGAAAATCCTGATATTTTTTCCCGCTGCAGCCCGCACGGGTCAAGCGCGCGGGGGCTGACCAACACTTTCCAGGTCAGGTCGAGTTGATTGCTCCCAGCTCACGCTCCGAAATGCGGTGCTGAACCACGGGAAGGAGGGGGTGGGGAGGAAGGCAGGCAGTTGCATCCTCGCGAGTGGGGAGTGCGAGGCCTCCTCAGCTCCAGCCAGCTGGGTGAATGGGGCGCGCACGGCCCCGTAACGCCGAGCGTGGATAAAATATGCTAGGACTGCGCTTCTCCGGCTCATCAAGGCTGCGGGAGCCTCCCCGAGCCATCATCCTTCGTAATTGCAACCGTCAATCAACACTTTAAGACAAAGTCAGAACCGGGAAGGGCGAGCCCTGGAGACCTGTCTCGTCGGAAAGAAGGAGGTGGAGGGGAGGTGGGGGAAAAGGAGAGAAGTTTGCCAGAAGTTGGCAGAGGGAGTGCAAAGAAATTGAGAACGCGCAAGGTAGTTGAGCAGAGCTGTCCCCCGGTCTCACCACAGACTCCCAGGCCTCCCGGGTTCTAGTCTCTGGTCTCCGCCACCAGTTACAATTCCCGCAGCGGTAAGTACGGGGTGGGTTCCTAAGTGTGCTTACACTAAGAGGTACAGTGGCAGTTGCTAAGATGTCCCCGGCGGAGGATGAGATGCGTCTGTCCACCCGCGGTAGGTGTATTTATGGGTCAGTGCAGACCACCGCTGGCGCCGGCGTTTAGACCACACAGACCCGGTTCCACCTACTTACATCTCAACTGCTTTCCCTTCCCGCAGCCACTTGGCTGTCTTCATATTGTGGCCTCGGGAACCCAGAACCATTCTCAAATAACCCATCTTAGACACCGCAAACTCGGGTTCCTCCTCCCACAGCTTCCTTTCGGAGAGGGCTTTCTGGGGGACGCCCAGACCCGTCCAAGGTCACTGAGCTAGCGGGTCCCCGGCTTCAACAGGGGTCCCTTGCCCAGCAGAATTGAAGGGTCAAAGGACCAGAGTGAGTGCTCAGAGGGAGGAGGGAGTTCTGAGGGAGAAGAAAGGGTGCACTTGGAGGGCAGTAATGAGCTTGACGCTGGAAGCCTGGTGCCGCCGCCCCTGCCTCTGCCTCTTGGATGGAGACCCAGCTGCTTCCTTAAATCCCTTGCAGAGCTACCTGAGGAAGGTTTGTGTGCCCTCGGGTCTCTGGCAAGAATCAATTCCAGTGGAAGATTCCTTGCCTTGTCCACTGCTGGCGGGGATCTTGACATCCTTCCAGGGGATCTGAAATAGGGCTGCCCCCAGGGAGCGTTTCCCATCGTCGAGTTAAAGGCCTGGAGCGCCGAGGGCTTAGGCTTCTGAGCTAGGAGTTCCCTTGGTTCTTAGGAAAGGTCGTTTTCTCTCGCTCGAGACTTTCTGCTCTTTCAGTCCCCCTCCATTTCGCTGCTACGCTTAGGTTTTGGCCTGGACTAGACTTTCAAAGCAAAGGAAAGGGCTTCCCTCCGTGATACAAGCTCCTGCGTTAATTTTTTAAAGCATGGATTTTTAAAACCCAGTCCCCAGCCACCGTTCCCTCCCGCACCCCTCCCATTTTGTGAGGATTTTTCTTTCCTGGAAAGTCCACCTGTGGAGAGATAAATGAGTGCCAGCTGGCCTTTTGCCACCACCACTCTCCATCTTTCGGGGATGTGGTGGGAGGGTAGACTGGCATGGACCAAGAAGTCGCTAGTGTGGCCTAAGCAAGTCCCTTCTGGCCCTGGCAGCTGGCGTTATGAGCATGGTCACAAAGCTTGTCTCACTAGGTCAGCCTCAGCCTCAGGTTCAGCCTCAAGCCAAGGCAGGGTTTCTTGATACACTACAATTTCAAGGTCCTGTCAGACCCTCTTTCAACTTCTTTCAACTCTCCTAACTTCCCCCGGCTTCACCAAGCAGAGGTGAAATCACCACCACACACTAGGGGTTGGAGGTTTCCTCTTAGGACCAAGCGTTTGGAGTCCTGCATCCTTGCCATGCTAGGGTCTGGGAAAGGTGCTGTATCATAAGTGCACCCATAAATTCTTCGCATTGCTGTGGGAGGAGGTTCTTCTTAATTAAGGCTTTGAAATAAACTGATTTTCAAAGTTCACGAGCAAAGCAGGGCAACCACTGCAGTGAGCCCTGAAACTGACTCCCTTTCTTTATTTTCTTAGTTCTCAGTGATACTTAAAACAACTAGGAATACTGAAATGTAGTGACAGTGATACTTGATACTATCACAAAAATTGGAGCTTTTGGCAACTTCAGCCCACTTCTCCATACAAACTAATGGACAGGCCTTCATAAGTTTAAATGTTTCCACGAAACCTGAAGTTGCTACTAAAGCTGAAGTCTAAATAACTTTGATCCTGAATATATATTGAAGAGCAAAATGACAAATCAATTAAGAGTCAGTAGTACCTGAATTGCCAGGTGTGGGTGGGTGATGAACAACCCATTTTATGTACATTATGCACTGCAAAGATTGGAATAATTTCCAAGTCACCAAATACCGGATTGGGCAGTTTCAATGTGTAATCTCTATACCATTCAAATAGAATAAACTTAGATCTTTTGAGATTCAAATTCACCCCCTTGTGGGTGGACTCTGATAATTACTTCGTTGCACAGCAGATTCTAAATATGAGGCATTTCGCATGCAGTCAGGAGGCTGGAAAGAATGTTTTTCATCTTGTTGGGAGGAGATCTGAAAACTTTGAAGATGCGGCTGGGCTGGTGGTCGAAGAGCTTGCGTAACAGATGGTTCTTTAAAACATTTTTTAAATGCTGGGCCTCGGCCTCAAGTGGATGGTCCCATCAGACAACAGAATGAAAAAGTACAGCCTGGACTGATCCTTGTATTCCGTGTGGAAACACAGGTCACTAAAACTGGAAAGTCTGTCGCTTAGATGATCTTGGGCTCCAGTCGAGGGTCTTTTAAAAGTGAACGAAGGGACTAGGGAGCAGACTGGGGAAAGAGGAGTCGCTGCCCCTTCCTCTAATTCTATGAGTGAGCTCTTGGCTTGTGGCCCGCCTCTCATTGAGCTGACCCTCGGCCCCTTCAGGGCGCCGGGGCCCACGTGTCGCCTCTTCAGGGTCTCAGTGCCCTGGGGAGTTGAAGCTGGAGGACCCTTGACCGCAGACCAACTCTGCATGTAAGAACGGTCAGCTAAATTTTCTCCTTTCAATGGTTTAAGTGGGTGTTTAACTCCCTTCATCTCCTCATCCGACACACTAGCAAGGGCACACGCCCACCCGCGCCCCCATCCCTTCTTCTTGCTTCCCCTCAGATCGAGGAAATTGCCGCTCTGGCTGCTTCTCCTTCGCCGCCACGCTCAGACAGAGGTCGCTTCTGACTAGCTGTAAGACCCGGCTGCATTTACATCCCCCCGCCCCGGGCCAGGGTGGGGTGGGAGGGGGTGAGGCGGGGTGAAGAGGTTGGGGCAGGCCGGGGGACTGGAGCCTGAGCCTCATCCTTATTGGCTGGCGGCTAGTGTCCGACCTGAGTCCGGAACCCGCGTCCGCATTCACTGTCTTCACCCCTCAATCCAGCCTTCCCCCAACCCCTGGCCCTACTTACCTCCTTCTCCCCCTCGTCTTCCCCCCTGTCCTTCCCAGCACCGTCACCCTCGGGGCTGGGAAGGGCCGTTCTCGGTCCCGCGCGGGGAGTGGACCAGGCAGGAGAGGGAGGTTGGAACTTCACAACTCCACACTTGCGATAGTGAGCAAGAGAGAGGCAGAGAGAGATAGGGGGAAGGGGCGGAGAGGAGGGGAGAGAGAAGGGAGGCGAGAGAAAGAGGAGAGAGACCCCTGCCGATCCTGAGCCAGAGGGCGGTGGAGGGAGGGGAAGGAGTCGCCCGAGCCGTCCGGGAGCAGTGGCAGCGGCACAGCCGGGGCGGCAATAGCAGCCCCGCGGTCGCCTCCGCTGCCCGCCGGGAGCTCGGCGGTTCACGGCTCCGCGCCCCGGGCAGCTGCGTCCTCGCCACCGCCGCCGCCTGCGCCCTTGCGGAGCCGAACCAGAGGGCCGGGACGCTGTCTTCCTCGCCTCCTTTTTTAACCCTGACCTCCTCCTCGCAGCTTGGGGGCGGCTCCGGAGCTGCGAGACCGGACAGGGCTCAGAGGTCCTGCCCGGCAGCCCCGAGGAGGCGGAGGCACGCTCCGGCGAGGCGAGAGGGTTGGGTTAGCAGGCATCCCGGTCGCCCCTTCCTTCTTTTCGCCGGAGTTGAATCTGTGCTGCCCGTGTCCAG
Seq C2 exon
GTGCTGGGCTTCCGGACCGACACGGATCCCCCATCCCCGCCCGCGGTCGCCTTGTCATGCTGCCCAAAGTGGAGACGGAAGCCCTGGGACTGGCTCGATCGCATGGGGAACAGGGCCAGATGCCGGAAAACATGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116833-NR5A2:NM_205860:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.745 A=NA C2=0.631
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)